GgaINT0008976 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4908195-4909389:-
Coord C1 exon
chr15:4909206-4909389
Coord A exon
chr15:4908396-4909205
Coord C2 exon
chr15:4908195-4908395
Length
810 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CGTTCTTTTTGTCTCTTAAGATT
3' ss Score
8.92
Exon sequences
Seq C1 exon
GTACGTGCAGCCCCCTGTGATCAGCTTTGAAGCCATCTTTGAGCAGAGCAGTCCTCGCTCACCGGTTGTTTTTATCTTAAGTCCCGGCTGTGATCCCATTAGTGACCTCATGAAACTGGCTGAGAGGACAGGCTTTGGAGGGGATAGACTCAAATTCCTAGCCATGGGACAAGGCCAAGAAAAG
Seq A exon
GTAACATCAGTGGGAGGGTTGGGACGTTCTGTGGGCGCTCAGTTAGTGTGTGAATTGCACATCAAGCTTTTATTCTCATGGACTTGTCCAAATTTCCTTTCTGAACGCCACTGAAAATGAAGTTAATTTGTGCTTTGGAAATAGAATACAATTTGCCAACCTGGAAATAATGCGTTTCTGTAATGTGAGAGAGGCCATTTGGCTGCTAGGATGTTTTTATGGTTTTTATGTTCAGAGTGATATTTTCAGCTGTTAAAAAGTAGTTGAGCTGAGAAGTTGTTCTGTAGCCCTTCAAAGGGTCATCAGTGACTCTGTCCTTGTGTAAGGACATGGGTTGATCTGAAGTCACAGTGTTTGTTACAAAAAACAAATCCTGCTGCTCTTTCTGTCTTTCCTGTAGGTTTTTTTTTGTTATGGACCCATAGGCTTAAGCATCCACAGCTTAGCAGCTGCTGAATTTGCTGTGATTTCAGTCAATGGAAGTACTCTTAGTAGCTTCATTTAGATCGCCCCTTGTTAGACTCTGATCACCATCCTGTTCTGGGCCACATACACTACTTCAGTGTCTTGAAATGCTTCAGTAGTCTACATGACTTTAATTTCAAAATGGATTAATGAAATAAAAGAGTATCTTAGCAACTGACTGTGATATTGGTGCAATTCCATTTACAGGGAGGAGTGTTCTACTATAACTAAAAGACTGAGTATGTTTGCTGGCAAGAGGAAGTCTCCTGCACTAACCTGTGAGAGTTGGTTTGCTTTCATGATAAAGGGAGTGTTACTCACAGATCGTTCTTTTTGTCTCTTAAG
Seq C2 exon
ATTGCCCTGCAGATGCTGGAGAATGTGGTGGTTAGAGGAGAGTGGCTGATGTTGCAGAACTGTCACCTGTTGGTGAGGTGGCTTATCACTCTGGAAAAGGCCCTGGAGAAAATCACAAATCCTCACCCAGACTTTCGCCTCTGGCTGACTACTGACCCAACCGAGGGCTTCCCGATAGGAATACTGCAGAAGTCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(14.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCCCTGTGATCAGCTTT
R:
CCTCGGTTGGGTCAGTAGTCA
Band lengths:
342-1152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]