BtaINT0050243 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30487019-30487328:+
Coord C1 exon
chr4:30487019-30487135
Coord A exon
chr4:30487136-30487241
Coord C2 exon
chr4:30487242-30487328
Length
106 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
TTTTTTTCTGCCTTCATCAGGAG
3' ss Score
8.97
Exon sequences
Seq C1 exon
GAATTACCTGAAAGATGGGAAACTACCAAAAAGATTGCAGCAGCTGTCAGACACGAGGTCTCACCTCTCCAAAACGCAGAAGTCTCCCTCATAAGGAAAGCGTGTGTTTTGTTTGAT
Seq A exon
GTAAGCTAGCTAACAAAGATGTTTTGTTGTTGTTTGTTTAAGAAAGGTTTTATAAGACTGGTTGAAGCTGTTTGAGATTCACTTTGTTTTTTTCTGCCTTCATCAG
Seq C2 exon
GAGAAGCAGGCAGAGTTCAGAGAGAGATTCAGATTCTATGCGCCCCTTCGTTTTAATGCAGAAAATCCATATACAGTACTCGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGAAAGATGGGAAACTACCA
R:
CGAGTACTGTATATGGATTTTCTGCA
Band lengths:
194-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]