HsaINT0049301 @ hg19
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21646044-21646351:+
Coord C1 exon
chr7:21646044-21646160
Coord A exon
chr7:21646161-21646264
Coord C2 exon
chr7:21646265-21646351
Length
104 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGC
5' ss Score
7.1
3' ss Seq
TTTTTTTTTGCAATGATCAGGCA
3' ss Score
4.7
Exon sequences
Seq C1 exon
GAATTACCTGAAAGATGGGAAACTACCAAAAAGATCGCAGCAACTGTCAGACATGAAGTCTCACCTCTCCATAATGCGGAAGTCACTCTTATAAGGAAAAAATGTATTTTGTTTGAC
Seq A exon
GTAAGCTAGTTACCAAGTTTTTGTTTTAAGAAAGGTTTTACTAGGATAATTGAAGTATTTGTTTGAAATTCACTTTTTTTTTTTTTTTTTTTTGCAATGATCAG
Seq C2 exon
GCAAAGCAGGCAGAGTTCAGAGAGAGATTCAGACACTATGCCCCTCTTGGATTTAATGCAGAAAATCCATACACAGCGCTTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-DNAH11:NM_003777:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACCTGAAAGATGGGAAACTACCA
R:
CTTATCAAGCGCTGTGTATGGA
Band lengths:
202-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)