MmuINT0050657 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119358946-119359249:-
Coord C1 exon
chr12:119359133-119359249
Coord A exon
chr12:119359033-119359132
Coord C2 exon
chr12:119358946-119359032
Length
100 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TGCTTTTGTACTCTGATCAGGAA
3' ss Score
7
Exon sequences
Seq C1 exon
GAATTACCTGAAAGATGGGAAACCACCAAGAAGATTGCAGCCATGGTCAGACATGAGGTCTCGCCACTCCAAAACGCAGAGGTTACTCTTATACGGAAAAAATGTATTTTGTTTGAT
Seq A exon
GTGAGTTGGATACTGGGTTTGTGTTTGTTTATTTTTAAGGAAAGCTTCGCAGTGATAATTAAAGTTATCTGATTGACATTTGCTTTTGTACTCTGATCAG
Seq C2 exon
GAAAAGCAAGCAGAATTCAGAGAGAGATTCAGAAGCTATGCTCCTCTTGGATTTAAGGCAGAGAATCCATACGCAGTGCTTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCACCAAGAAGATTGCAGC
R:
CTTATCAAGCACTGCGTATGGA
Band lengths:
186-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: