DreINT0058029 @ danRer10
Intron Retention
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19547230-19547519:-
Coord C1 exon
chr16:19547403-19547519
Coord A exon
chr16:19547317-19547402
Coord C2 exon
chr16:19547230-19547316
Length
86 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ATTCATGTCTTTTTTTTCAGAAA
3' ss Score
9.31
Exon sequences
Seq C1 exon
GAGTTGCCGGAGAAGTGGAACAGCCTAAAGAAGTTTGCCTGGACAGTGAAACATGAGGTTGCTCCTCTTCATAATGCGGAGGTGGTTATCATCCGCAGGAAGTGTGTAGCCTTTGAG
Seq A exon
GTGAGATACTTATTAAACAATGTCTATATTATTTGAAAGGGTGAAACTTTTTTGTACCTTTTTTTAATTCATGTCTTTTTTTTCAG
Seq C2 exon
AAAAAGCTGTATCAGTTTAGAGGAAAGTTCAGAACAGAAGCTCCTCTTCAGTACAACACAGATAAACCTTATGCTTGTCTGGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384:ENSDART00000148294:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGCCGGAGAAGTGGAAC
R:
TGTGTTGTACTGAAGAGGAGCT
Band lengths:
177-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]