BtaINT0050274 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30612964-30613878:+
Coord C1 exon
chr4:30612964-30613129
Coord A exon
chr4:30613130-30613775
Coord C2 exon
chr4:30613776-30613878
Length
646 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TTCTGTTTTCTATCTTGCAGGTA
3' ss Score
12.68
Exon sequences
Seq C1 exon
GAATTCTTGAGAAACCTCTAGAGAAGAAAGCTGGTCGTAACTATGGTCCAGGAGGAAATAAAAAGTTGGTCTATTTTATTGACGACATGAATATGCCTGCAGTGGACTCGTACGGCACTGTCCAGCCCCACACTCTGATTCGACAGCATATTGATTATGGACACTG
Seq A exon
GTAAGCGATTCTGTGTTTCATTTTCTACTGAAATCTAATTATTATTACTATGGATAAAATTTTTTAAATAGAATCACCCCAGTTTCTTCCTCTTCTGAGGAGCATCTTCTGTGATACTTTTTTGGGTTTCAGTTTGCTTCCCCTTTTGCTCATCTTAAATGGAGTAGATTTTCTTTGCATCATTGGAAGAATTGGATTGAAAAGTATCTTAGAAACATAAACTCTCCAGTTAAAGCTTAAGCTCCTTAATATATTAACTCACAGTTACTTAGGAGAAGCTTGACATTTTCTGTAAGATGTAAACATCTGGTAATGTCTGGGCATCACAGTTGACAGTCCCTGATGTTAAGCAGGGGAGAGCCCCTAGTCTTGCTATGGGTATTTTTAACCAGACTAAAGTGAATCAATAAACAGCAATAATACCTATTGATTTAGCTCCACGTGTTGATACTAGCATCAAAGGAGCCACATAGTCTTCAGCTTTCCAAGCTTTAGTTTTTATCTCTCAGATAGGCTAACAAGTTCAACATCACACAGTGATTATAAAGATTAAAGAAAACAATTTATGCTGAAGTCCTTTATGAACTGCTGGGATTTGTTGTTATTTTGAACTTTGGGATTTAAGGTTCTGTTTTCTATCTTGCAG
Seq C2 exon
GTATGACAGACAGAAAGTGATGCTTAAAGAAATCCACAGCTGTCAATATGTTGCCTGCATGAATCCGATGGTGGGCAGTTTCACCATCAATCCTAGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.3=100)
A:
NA
C2:
PF127752=AAA_7=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCTTGAGAAACCTCTAGAGAAGA
R:
TCTAGGATTGATGGTGAAACTGCC
Band lengths:
262-908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]