MmuINT0050688 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119256073-119257344:-
Coord C1 exon
chr12:119257179-119257344
Coord A exon
chr12:119256176-119257178
Coord C2 exon
chr12:119256073-119256175
Length
1003 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTCTGTTTCCTGTTCCGTAGGTA
3' ss Score
10.61
Exon sequences
Seq C1 exon
GAATTCTTGAAAAACCTCTAGAGAAAAAAGCTGGTCGTAACTATGGTCCAAAAGGAAATAAAAAACTGGTTTATTTCATTGATGATCTGAACATGCCTGAAGTGGATTTGTATGGCACTATCCAGCCTCATGCGCTGCTTCGGCAGCATATTGACTATGGGCACTG
Seq A exon
GTAAGTAAGCCCCTGTGTTCTACTGCCTATCGAAACCTCATCCTTACAGTGGAGGGACATTTAAAAACAGAATTGTCCTGGATTGCTTCATCTTCTGGGAGCATTTTTTGTATCTTCTATTTGTAACATTGTGCATGTGTATGTGTGTGTATATGTGTGTGTGTACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGTTTGTACGTATATGTTTGTACAGATGTGTGCACATGTGGTGGCCGGAGATCTACACCAGATACCAGATCACCATCTTGTTTTTTGACACAAAGTACTTCGATGAACCTGGAGCTCCCTGGTTCTAGACTAGTTGGGGCCAAAGATCCTCCTGTGTCAACTGCTATGAGAACTGGTGCAAACTGTCATGCCTGGCTCTTACTTGGATGCTGGAGATCTAAAATCAGGTCTTCATGCTTGTGTGGCAAGAACCTTACTGACTGAGCCATCTTCCCAGCTCCCCTCTATATATCATATCGTCCTATAAAACAATACAGTTTCCCTCCATATCTTTGCGAGATTGGGTTGAAAAGTAGCTGAGCAACATAGCAACTGTATAGAAATTAAGTCTCACTAAGTTATTGAAGAAAATCTTGGCTTTACCCTGTAGGCTGTGAATATTTGATCAGATCTGGGCACTCTACTTTACTATCCTTGACAGTAAACACAGGATGAGGGGTCCCCAGACCACCCACTAACCTTTACTATGAGAACAGCGTGGTTTCCACCCATGGTAAGAGCCACATGAGAATCAATAACTAGGAATAGTTTATATTGACACGTTAGAGCTCCAACACATTCTGTCATCTTCCATTCTCCGAGGTACAGTTTTGATGTCCCTCAGATACGGTGCAGAAGGTCAAGCTTACAGAATTATTGTGAAGTTAAAGTATCTGTGATTAAATCCTTCACGAGCTGGTGGCTTACTGTTTTGTCACCTTGGCTTTTTTTTGGATTTGAGGTTCTGTTTCCTGTTCCGTAG
Seq C2 exon
GTACGATCGACATAAAATTATGCTCAAGGAAATCCGCAACTGCCAGTACGTAGCCTGCATGAATCCCATGGTGGGCAGCTTCACAGTCAACCCAAGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:47
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.3=100)
A:
NA
C2:
PF127752=AAA_7=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGTCGTAACTATGGTCCA
R:
CAGCCTTGGGTTGACTGTGAA
Band lengths:
238-1241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: