HsaINT0049332 @ hg19
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21778319-21779291:+
Coord C1 exon
chr7:21778319-21778484
Coord A exon
chr7:21778485-21779188
Coord C2 exon
chr7:21779189-21779291
Length
704 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTCTGTTTTCTGTCTTTCAGGTA
3' ss Score
13.5
Exon sequences
Seq C1 exon
AAATTCTTGAGAAACCCCTAGAGAAAAAAGCTGGTCATAACTATGGTCCTGGAGGAAATAAAAAATTGATTTATTTTATCGACGACATGAACATGCCTGAAGTGGACTTATATGGCACCGTTCAGCCTCACACCCTGATCCGGCAGCATATTGATTATGGACATTG
Seq A exon
GTAAGCAAGTCTCTGTAGTTTACTCTCTCCCAAAATCTAATAATTATTATGGATAATAATTACTATGGATGAATAATTATTATGAATAATTATTATGGATGAATTATTATGGATGAATTCAAGTGCAATTATCCCCAGTTTCTTCTAAGGAATATCTTTTGGGTTTGCTTTGTATCTCTTTTCATCATATTAAGTGTAATAGTTTCCCTTTGTATCTTTGGAAGATTGGATTGAAAAGTGTCTCAGAAATGTTAAGACTGTCCGGAAATCATGTCCTCTTTAAGAATTAACTCACACTTAATTATTTAAGAGAAATTTGATCTTGTTTGGCAGGGTGTAAATGTTTGGGCACTGTAGTCTGCAATCCCTGACAATTAACTACAGGGACAGCCCCCAGCACATCCATGGAGTCTTGCTATGGGTACAAGATAGTTTCTACAGAGTAACATGAGAATCAATAAGCAGTAATAGTTTACATTGACGCAGCTCCAGATCTTGATTTTTGTCATCAAATGAGCTAAGTCAACTTCAGTTTTTTGAGCTTCAGTTTTGATGTCTCTCAAATAAGGCTCACTAGGTCAACCTCACAGAGTGATTATGAAGATAAGGAGGTAATCTGCGATGAAGACCTTTATGAACTGTTAGATTTTGCTCTTTTGTCATCTCCAGTTTTTGGATTTAAGGTTCTGTTTTCTGTCTTTCAG
Seq C2 exon
GTATGATAGACAGAAGGTGATGCTTAAAGAAATCCATAACTGCCAGTATGTCGCCTGCATGAATCCGATGGTGGGCAGCTTCACCATCAATCCCAGGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-DNAH11:NM_003777:47
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.3=100)
A:
NA
C2:
PF127752=AAA_7=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTTGAGAAACCCCTAGAGAAA
R:
GCCTGGGATTGATGGTGAAGC
Band lengths:
262-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)