BtaINT0050311 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30793932-30794663:+
Coord C1 exon
chr4:30793932-30794044
Coord A exon
chr4:30794045-30794522
Coord C2 exon
chr4:30794523-30794663
Length
478 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTCCCTCCTCCTCCAAAAGCGA
3' ss Score
5.9
Exon sequences
Seq C1 exon
GTTTAACGACCTCCTCCTGCGATGCCGGGAACTGGACACCTGGACACAAGATCTTGCCCTTCCAGCTGTGGTGTGGCTTTCTGGCTTCTTCAACCCTCAGGCCTTCTTAACAG
Seq A exon
GTAAGAGCTGGGATAGGGCAGCCCCTGATGCTGATGGAGCCATGCCACGAGCAGAACCCCAGCCTCATGTCCCTGGAGCTGCTCCCCTGCCCTGGTAACCCGTCCTCACGCGGCGGCCACTGCCAAGGAAAAAGGACACCAGGCAGGACGGAAGCAGCCAGGTGGGTGGAGTGTGGGTCACCCAGAACACGTTCTCCATCGGGGCCCACAGTCTCACGCGGCTGTGCTCGGCCACGGTAGTTAGTGCAGAAGCAAACCAACCAGCCAGCGGCACTCGGGCATGACTATTCCACTCAAGCGCCATCCACAAAACTGGCCTTTGTTCCACCCCTGCTCTAGTGCAGCCTGGCGGGTAATGCCCCGAACACCCCATGGGACCACAGCTTACTTTGGGTGGACAGTCGGCTCAATGGGGGCTCCAGGGAATCTTATGTATATGACTTCCTCCTGCTCACACCTGTCCCTCCTCCTCCAAAAG
Seq C2 exon
CGATCATGCAGACCACAGCTCGAAAGAACGAGTGGCCACTGGACAAAACGTGCCTGACTGTTGACGTTACCAAAAAAACAAAGGAGGACTACGGGCATCCCCCTAGGGAAGGCGCTTACCTCCACGGGCTCCTCATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:80
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTAACGACCTCCTCCTGCG
R:
CTTCCATGAGGAGCCCGTGG
Band lengths:
254-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]