MmuINT0050725 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119118363-119119037:-
Coord C1 exon
chr12:119118925-119119037
Coord A exon
chr12:119118504-119118924
Coord C2 exon
chr12:119118363-119118503
Length
421 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TCTTCCTTTTTCTCCCAAAGCAA
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTTTAACGACCTCCTCTTACGCTGCCGGGAACTTGATACTTGGACTCAAGACCTCACCCTCCCAGCTGTTGTGTGGCTTTCTGGGTTCTTCAACCCTCAATCTTTCTTAACAG
Seq A exon
GTATGGCTGGAGGCAGGGGATGGGGGTCATACTCCTGGTAGAAGTCCTGCCTGGCTTTACCTGTGACAACTTCTTGTCCTTCTCCACCCATCTTTTCAAACAATCATTTCAAAGCAGGGGCAGCAATGAGGGTTCTAGTTAGGAAGGAGAGGGCCAACAGCATAGCTGCAGTAGTGTAGTATATCCTAGAGAAAAGCCACTGTCTGTCACTGTCACACTGAAGGAACACAGGCAACTTAAAAGCAAATGGCAGTTGCTGCTCCAGTATATCCTTATTTGTGACCATGGAGGGCAAAATGGTCCTGCAAGCCTGTATGCCCAGCATAGCTCTAACCTATGATACCCCATGGGATACTGTGGGCTATTGGGACCCTATAAACAGCGTTTTTACCTTCTTCAATTCTTCCTTTTTCTCCCAAAG
Seq C2 exon
CAATCATGCAGACCATGGCTCGAAAAAACGAGTGGCCACTGGACAGAATGTGTTTGACTATAGATGTTACTAAAAAAACCAAGGAAGACTATGGCCACCCCCCCAGAGAAGGTGCATACCTTCATGGCCTCCACCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:80
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTAACGACCTCCTCTTACGCT
R:
CTTCCAGGTGGAGGCCATGAA
Band lengths:
254-675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: