DreINT0009183 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19379772-19380097:-
Coord C1 exon
chr16:19379991-19380097
Coord A exon
chr16:19379913-19379990
Coord C2 exon
chr16:19379772-19379912
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GAAATAGTTTTGCTTTGCAGCAA
3' ss Score
5.64
Exon sequences
Seq C1 exon
TGATGTTCTGGCTCAGTGTCGAGAGCTGGACACATGGACTCACGACTTTGTGTTTCCCGCCGTGGTTTGGATCTCTGGACTTTTTAGCCCTCAGTCATTTCTTACAG
Seq A exon
GTGAGATGAGAAAAAAATATAAACAAAAATTCACAAATCCAAAATAGAGACTTGTGCTGAAATAGTTTTGCTTTGCAG
Seq C2 exon
CAATTATGCAGAGTATAGCTCGCAAAAACAAGTGGCCTTTAAATAAGATGAGCCTGTCTGTGGATGTCACTAAGAAAAGCAAGGATGATTATGGGCATCCACCTCGAGAGGGAGCCTACATACATGGACTCTACATAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTGGCTCAGTGTCGAGA
R:
TGACATCCACAGACAGGCTCA
Band lengths:
173-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]