BtaINT0050337 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54343421-54343724:+
Coord C1 exon
chr19:54343421-54343537
Coord A exon
chr19:54343538-54343637
Coord C2 exon
chr19:54343638-54343724
Length
100 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
CTCACATGGTCCTCCCGCAGCTC
3' ss Score
8.44
Exon sequences
Seq C1 exon
GAACTGCCGGAGCAGTGGACAAACACCAAGAAGCTGGCCCTCCAGGTGAAGCAGAACGTGTCGCCCCTGCAGGCCAACGAGGTCAGCATCCTGAGGCGGAAGTGCCAGCAGTTCGAG
Seq A exon
GTACGGTGGCCTGGCGGGGGTGGGAGGGCCGGGCTGCAGCTCCCACCATGGCCGGGCCCTGGGGCGGGGGGCCTGAGCGTCTCACATGGTCCTCCCGCAG
Seq C2 exon
CTCAAGCAGCATGAGTTCAGAGAGAGGTTCAGGCAAGAAGCCCCATTCAGCTTCAGCGACCCCGACCCCTACAAGTCCCTCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGTGGACAAACACCAA
R:
TACTGAGGGACTTGTAGGGGTC
Band lengths:
194-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development