HsaINT0049526 @ hg38
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78526651-78526996:-
Coord C1 exon
chr17:78526880-78526996
Coord A exon
chr17:78526738-78526879
Coord C2 exon
chr17:78526651-78526737
Length
142 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTA
5' ss Score
6.46
3' ss Seq
TTTGCACTCTTCTCTCGCAGCTC
3' ss Score
9.8
Exon sequences
Seq C1 exon
GAGCTGCCGGAGCACTGGGCAAATACCAAGAAACTGGCCATTCAGGTGAAGCTGACCGTGGCACCACTCCAGGCCAACGAGGTCAGCATCCTGCGGCGGAAATGCCAGCAATTCGAG
Seq A exon
GTATTATACCTGGGGCAGGGTGGCGGGATTTCCGGGGAGCAGCGTGGGGCTCACCCAGGGCCCTGCGGCATACAGGGTGGGGCCACCCTTGGGGCAGGTGGCCGCCCCGTGACTCTCTGTACTTTGCACTCTTCTCTCGCAG
Seq C2 exon
CTCAAGCAACATGAGTTCAGGGAGAGGTTCAGGCGCGAGGCCCCGTTCTCCTTCAGCGACCCCAACCCCTACAAGTCCCTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775:ENST00000585328:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGGCAAATACCAAGAA
R:
TCAGGGACTTGTAGGGGTTGG
Band lengths:
188-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development