HsaINT0049526 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76522733-76523078:-
Coord C1 exon
chr17:76522962-76523078
Coord A exon
chr17:76522820-76522961
Coord C2 exon
chr17:76522733-76522819
Length
142 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTA
5' ss Score
6.46
3' ss Seq
TTTGCACTCTTCTCTCGCAGCTC
3' ss Score
9.8
Exon sequences
Seq C1 exon
GAGCTGCCGGAGCACTGGGCAAATACCAAGAAACTGGCCATTCAGGTGAAGCTGACCGTGGCACCACTCCAGGCCAACGAGGTCAGCATCCTGCGGCGGAAATGCCAGCAATTCGAG
Seq A exon
GTATTATACCTGGGGCAGGGTGGCGGGATTTCCGGGGAGCAGCGTGGGGCTCACCCAGGGCCCTGCGGCATACAGGGTGGGGCCACCCTTGGGGCAGGTGGCCGCCCCGTGACTCTCTGTACTTTGCACTCTTCTCTCGCAG
Seq C2 exon
CTCAAGCAACATGAGTTCAGGGAGAGGTTCAGGCGCGAGGCCCCGTTCTCCTTCAGCGACCCCAACCCCTACAAGTCCCTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGGCAAATACCAAGAA
R:
TCAGGGACTTGTAGGGGTTGG
Band lengths:
188-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)