RnoINT0048825 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107110113-107110447:-
Coord C1 exon
chr10:107110331-107110447
Coord A exon
chr10:107110200-107110330
Coord C2 exon
chr10:107110113-107110199
Length
131 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
3' ss Seq
TATCCCCTGCTCTCTCACAGCTC
3' ss Score
9.78
Exon sequences
Seq C1 exon
GAGCTTCCAGAGCAGTGGACCAACACCAAGAAACTGGCCATTCAGGTGAAGCAGAATGTGGCGCCACTCCAGGCCAACGAGGTTAACATCCTGAGGCGCAAGTGTCAGCAGTTTGAG
Seq A exon
GTAGCCTGGGCTAGGCTGGGGAGTGGAGGCCAGGGCTGGGAGCATGGGTGTGGGCGCAGCCCGCTGGGATGCTCAGAGCCAGCCATGGTGTGACCTCCCTCCCCCACCCTCTATCCCCTGCTCTCTCACAG
Seq C2 exon
CTCAAGCAGCACGAGTTCAGAGAGAAGTTCAGACGTGATGCCCCCTTCACCTTCAGCGACCCCGACCCCTACAAGTCCCTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGAGCAGTGGACCAAC
R:
TTCAGGGACTTGTAGGGGTCG
Band lengths:
197-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]