BtaINT0050361 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54367235-54367876:+
Coord C1 exon
chr19:54367235-54367408
Coord A exon
chr19:54367409-54367668
Coord C2 exon
chr19:54367669-54367876
Length
260 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CCCTCTCTGCCCCCGACCAGGCC
3' ss Score
8.48
Exon sequences
Seq C1 exon
CTTGTAGATTATCGGGTCGAGTTCAGCAGGTGGTGGATCAACGAATTTAAGACGATCAAGTTCCCCTCTCAGGGGACGGTCTTCGACTACTACATAGACCCTGACACCAAGAAGTTCCTGCCATGGACAGACAAAGTGCCCGCCTTCGAGCTGGACCCCGACGTCCCGCTGCAG
Seq A exon
GTAAACGGCCCCAAACGGCCCAGAACAGTGACGATGGACGACGACTGAGGAGCGGGACCCAGAGTCCCACCCCATGCTTCTCATCGGGACGTCCAGTCGCAAACAGTTTCCATCAGTAGGACCTTTTCCGTGAGACTGGGGGATTTAATGCACTGCCCAGGTCTGTAGGTTTGTCCGGAGGTGGGACCTGGAGACCTGGGTTTGTCTGAGGTCATGGCTCCTCCCCCGACATCTTCGCGCCCCTCTCTGCCCCCGACCAG
Seq C2 exon
GCCTCACTGGTGCACACCACAGAAACCATCCGCATCCGCTACTTCATGGACCTGCTCATGGAGAAGTCGTGGCCAGTCATGCTGGTGGGGAACGCGGGGACAGGCAAGTCGGTGCTAATGGGGGACAAGCTGGACAGCCTGAGCACAGACGACTACCTGGTGCAGGCCGTGCCCTTCAACTTCTACACGACCTCGGCCATGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
NA
C2:
PF127752=AAA_7=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTGGTGGATCAACGAAT
R:
AGGTAGTCGTCTGTGCTCAGG
Band lengths:
307-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development