MmuINT0050767 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117934830-117935376:-
Coord C1 exon
chr11:117935203-117935376
Coord A exon
chr11:117935038-117935202
Coord C2 exon
chr11:117934830-117935037
Length
165 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CATCCTGCTACGGCCCCCAGGCC
3' ss Score
6.28
Exon sequences
Seq C1 exon
CTCATTGATTATCGAGTGGAGTTCAGCAAGTGGTGGATCAATGAATTTAAAACAATCAAGTTACCCTCGCAGGGGACCATTTTTGACTACTACATTGACCCTGAAACAAAAAAATTCCTGCCTTGGACAGATAAAGTGCCTAACTTTGAGCTGGATCCCGACATCCCACTACAG
Seq A exon
GTAACCTTTGCCAGAGCTGTGGCCGGGAAGAGAGCTCGGTGTCCCCTCCTACCTGAGTTACAGCAGGGCCCTTTAGTGACCCCGGGGACTTAGACCTGCAGGCCAGCTGGAACCACCTCTGCTGTGTGACACCCATGCCCTCTTCCATCCTGCTACGGCCCCCAG
Seq C2 exon
GCCTCTCTAGTCCACACCACAGAAACCATCCGCATCCGGTACTTCATAGACCTGCTCATGGAGAAGGCATGGCCCGTGATGCTGGTGGGCAACGCGGGCACTGGCAAGTCGGTGCTGATGGGTGACAAGCTGGAGAACCTCAGCACCGACGACTACCTGGTGCAGGCCGTGCCTTTCAACTTCTACACGACCTCAGCCATGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:46
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
NA
C2:
PF127752=AAA_7=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTGGACAGATAAAGTGCC
R:
TGGCTGAGGTCGTGTAGAAGT
Band lengths:
255-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: