HsaINT0049551 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76481632-76482215:-
Coord C1 exon
chr17:76482042-76482215
Coord A exon
chr17:76481840-76482041
Coord C2 exon
chr17:76481632-76481839
Length
202 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CCTTCCCTCCCCTGCCCCAGGCC
3' ss Score
9.47
Exon sequences
Seq C1 exon
CTTGTGGATTATCGAGTGGAGTTCAGTAAATGGTGGATCAACGAATTCAAGACTATCAAGTTCCCCTCGCAGGGAACGATTTTTGACTACTACATTGATCCTGACACAAAAAAGTTCCTGCCCTGGACAGATAAAGTGCCCTCCTTTGAGCTGGATCCCGATGTCCCACTGCAG
Seq A exon
GTAACTGTCCCCAAAGCAGGGCCACCGACTGGTGATTTAGAGGCAGGAATCGGTGCAGTACCCTCCACACGCCTGCACGGAATGTCCAAACACAACCGATTTTCAACATTAGGACCTGTTCGGTAGAACATGGCCTGCACACCCACGAGAGGCAGAAGTGTCTGAGAATCACAGCTCCCTCCCCTTCCCTCCCCTGCCCCAG
Seq C2 exon
GCCTCTTTGGTCCACACCACGGAAACCATCCGCATCCGCTACTTCATGGACCTGCTCATGGAGAAGTCCTGGCCGGTGATGCTGGTGGGGAACGCGGGGACGGGCAAGTCGGTGCTGATGGGGGACAAGCTGGAAAGCCTGAACACGGACAACTACCTGGTGCAGGCTGTGCCCTTCAACTTCTACACGACCTCAGCCATGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:46
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
NA
C2:
PF127752=AAA_7=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAGGGAACGATTTTTGACT
R:
TGGCTGAGGTCGTGTAGAAGT
Band lengths:
307-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)