GgaINT1011510 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10084784-10085711:+
Coord C1 exon
chr18:10084784-10084957
Coord A exon
chr18:10084958-10085503
Coord C2 exon
chr18:10085504-10085711
Length
546 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CAACCGTGTGCCTTCCCCAGGCC
3' ss Score
9.29
Exon sequences
Seq C1 exon
CTCACAGATTACCGTGCAGAGTTCAGCAAGTGGTGGGTGAACGAGTTCAAAACCGTCAAGTTTCCTGCTCAGGGGATGATATTCGACTATTACATCGACCCAGAAACAAAGAAATTCATGCCCTGGACTGATAAAGTGCCAACATTCAAACTCGACCCCGAAGTTCCCTTGCAG
Seq A exon
GTATTTCCCACAGGCTGTCTTCATTGCCGTGCTTTGTTTATCCCCAGCACTGCAGGCACTGGGCTGTAGGTGATGGCATCAGGCGAACTTGCAGCTCTCTGCAGTTTTGCTTCACTCCACGTACACCTCAGCGAGAGCTGCAAGCTGCAACTCTTGTTTTCAGTTTCAGTGCAACGCCTGGCTTTGGATTCTCAACACGATTTGCATACATCTTTTGAAATGCTGCAGTGAGGGAGGGAGGTTGCATCAAAGACGTGGTGGAAAAGGGGAAGCACCAGGGGCTGGACTGTGCCGTGTGTTGGCCAGAAAAGACATAGCACGAGTCTCAGGAAGGATGCTGTGTTGTTTTGATGTGTCTGATGGCTCCAGTTGTTGGTCAGAAAGCCCTTAGGATAGCCAAGTGCTGGGGCCTTTTGCTGTAGAGAGGGCCCAGATCGGTGCGGTGAGACATTGCCTTTGCTCAGAGCAGCAGCAGTGCCCAGAGAAGCGCCCAGCAGCTGCAGGCACGCTGTGCTGAGGCACATCCCAACCGTGTGCCTTCCCCAG
Seq C2 exon
GCCTCCATGGTGCACACCACCGAGACCGTCCGCATCCGCTACTTCATGGACCTGCTGATGGAGAAGCAGCGGCCGGTGATGCTGGTGGGGAATGCGGGCACGGGGAAAACTGTGCTGATGTGGGACAAGCTCGAAGCTCTCAACACAGAGGAGTACCTGGTGCAGTCTGTGCCTTTTAACTTCTACACCACCTCTGCCATGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
NA
C2:
PF127752=AAA_7=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCAAGTGGTGGGTGAAC
R:
TGGCAGAGGTGGTGTAGAAGT
Band lengths:
352-898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]