BtaINT0050367 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54370516-54372007:+
Coord C1 exon
chr19:54370516-54370613
Coord A exon
chr19:54370614-54371845
Coord C2 exon
chr19:54371846-54372007
Length
1232 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CCATCCCGCGTCTGGGGCAGGGG
3' ss Score
5.51
Exon sequences
Seq C1 exon
GAACAGCCCTGCACCAGAAAGTGACATCAACGTTTCTTCCCACGGCCATTAAGTTTCATTATGTTTTCAACCTCAGGGACCTCTCCAATATTTTCCAG
Seq A exon
GTACTGCTCTCTCAGCGCTACGTAATGCCACCTTATGGCCAATGCCTAATCCACGGGTGCTCGCCTCCTCTGCCATTCTTGGGAGAGAAAGCAAAGTGCCCTATGGATGGACGAAAGTGATGGAGGCGGATACGATGCGATGATGGTTGTGACAGATGATGATGAGGGTGGTGACCGTGGTGGTGGTGGTAACTATGGTGATGGTGCTGATGGTGACCATGGTGATAGTAATGATGGGGATAATGGTAACTATGGTGATGGGGGCGCTGTTGCTGATGGTGGCCATGCTGATAGTGATAATGGTGGTGATGGTTATGGTGGTGCTGGTGATGAGAGGGGTGCTGATAACGTTGGGAGTCATGGTGATGACGATGAGAGTGGTGGCGACGTGATGGTGGGGGTGGTGACAGTGTGTCTTGATGGTGGTGGTGGTGATGTTTCCTCTTATGGATGGACTGAACTAGCCACTGGGTTTGGCCACTTAGATCCCCATTTCCTCCTCCAAACAACACATAATGCTCAGATATCCCCATTTTTGCAGATGGGGAGTCCAAGGCTCAGGGAGGTTAAGTCACGCCCATCTCCTCCCATCTCAAGTGTCAGCTCAAATGTCGTGCCCCGAGAGGCCCCTCCTCCTCCACACACACCCTGTCCCACCGTCCCCGTGTATGTCACGGCACACATCACAACATGCGATTACCTTGTGATTTGTCTGTCTGGTTCTGTCTCCCCGCTACAAGGGGAGCTCCATGAAGGCAGAGTCTGTCCCGTCATCGCTGCACTCCCAGAACCCAGGACAGGGGCTTGGAAAATAAGCACCCATTGAACTTGCCAGGTCACTTGGTTGGCAAAGAGCTGAGCTAGGCCAGGCCGGGCAGGCTGGCTGCAGAGCTTGAGCTTGACGGCCGCCTCGAGGCCTCCCATAGTCAGCTCGCGCCTGAACAGACCCCTTGTCCCTTTCTCCACCATCCACCCCATTAGAGGGGGCAGCCCTTAACCCTGTCTGGTGAAGAGAATCCCCCTCACCATCTCTCAGACCACAGACACTCACTTCAGCCTCCAGGACTTGTGGCCTTGGCAGTCTCTAGTTTCCTGGGCCCCAAGTGGCTACTGTCCCACTCTACCAGATCACTTCCTGGGAAAGCGGCCACTATTCTCGTTTGATCCGTGTGCGGCACTTGGCTTGCCTCCCAACACACCTAAGGATGCTGACCATCCCGCGTCTGGGGCAG
Seq C2 exon
GGGCTCCTGTTCTCCACCGCAGAGATCCTGAAATTCCCGCTGGACCTCGTCCGCCTCTGGCTGCACGAGGCCGAACGTGTGTACGGCGACAAGATGGTGGACGAGAAGGACCAGGACACGCTGCGCAGGGTCACCATCGCTTCCACCAAGAAGTTCTTTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(11.7=100)
A:
NA
C2:
PF127752=AAA_7=PD(8.0=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGCCCTGCACCAGAAAG
R:
AGAACTTCTTGGTGGAAGCGA
Band lengths:
255-1487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development