MmuINT0050773 @ mm10
Intron Retention
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118067511-118069006:-
Coord C1 exon
chr11:118068915-118069006
Coord A exon
chr11:118067673-118068914
Coord C2 exon
chr11:118067511-118067672
Length
1242 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GTGTTGGGGGGCGGGGGCAGGGC
3' ss Score
-0.81
Exon sequences
Seq C1 exon
CCTTGCACCAGAAAGTCTCAGCGACGTTCCTTCCCACAGCCATTAAGTTTCATTACATCTTCAACCTCAGGGACCTCTCCAATATATTCCAG
Seq A exon
GTACTGCTGTAGCTCTCGGTCACGCTGCCCGTGGCCAAGTCCCTGACCTGCGGGGGCCGCCGCCGCCTCCTCTGCAGTGCTCGGGAGGAAACAGAAAATGAGTGTGGGATGAGGGTGGTGACGGGGGTAATGGGGACTTGTAAGGGTGGTGCTGATGTGATGATAGTGGTGATGGTGGTGGTGTTGGTGATGGTGAAAGTGGTGGCAGTGGTGATGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGGTGATGGCGGTGGTGATGGTGAAGGTGGTGGCAGTGGTGATGGTGGTGGTGGTAGTGGTGGTGATGGTAGTGGAGGTGGTGAAGGTGGTGGTGGTGATGGTGAAGGTAGTAGAGGTGGTGAAGGTGGTGGCAGTGGTGATGGTGGTGGAGGTGGTGAAGGTGGTGGAGGTAGTAGATGTCGTGGTGGTGGTAGTGGTGACAGGTTAAAGATTATGAATATGATGGCGGCCATTACATCCCTTCCTGTTTAATGGCTGCTTATTCCGAGCCAGGCATTGGGTTTAGCAGTGTATACAACCGTTGTCTCCTCCCAACAGCACACAAAATCAGAGCTCCTGTCCTCCACTTAACATGGGAAATCTAAAACTCAAAGTTAAACTTATGTGGGCCCCTTCCCACTCCCAACCATCAGCTCAAATGTCATATCCTTGCAAAGGCCTCCACACGTCCCATGTCGGTCAGCCCACTCTCCTCTCTCATGCCACTCACAGAACCTGCTGCTGGTTGCATCTCCCCATAGAGCACAAGCTCCGAACATACAGAGTCCACCCCACTACCGCAATGGTCCCAGGGCTTTTCTACTCTTAGACACCTGCTAAGCCTGAGTGGGCTTAGCCAGGACCCAACCCTCCCCAGGCTGGACCCACACGGCCTGCTGTGGAGCCTGAGCCTCTGTCACTGACCATGTCACCCAGTCACAACTCGCCTCCCTGTCCCTCCTCTACTATGACCCTCTTAGAAAATGGATCCCTTAACCCTGCCCTTGGAGGAAACTCCCCAGCCTCTGAAGGCACAGACACACCCTCTCAGCTGGGTGTGACCTCTGCAGTCAGTGACTTCTGGTCCCAAGCAGAAGCCTCACAGCAGCTTACATGGCTCCCTAGGGAAGTGCTCACCTGCACACCCCAGACCTCGATGCTCAGCTTGGCTTGGCTTGCCTCACTGAGCAGGCAGAGCCACTGACGCACACTGTGTGTTGGGGGGCGGGGGCAG
Seq C2 exon
GGCATCTTATTCTCCACAGCAGAGATTCTGAAAACCCCGCTGGACCTCGTCCGCCTTTGGCTGCATGAGGCTGAGCGAGTGTATGGGGACAAGATGGTTGATGAGAAAGACCAGGAGACGCTGCACAGGGTCACCATAGCATCTGTCAAGAAATTCTTTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987:ENSMUST00000132685:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(11.0=100)
A:
NA
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCACCAGAAAGTCTCAGC
R:
GTCAAAGAATTTCTTGACAGATGCT
Band lengths:
254-1496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types