BtaINT0050369 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54372519-54372987:+
Coord C1 exon
chr19:54372519-54372683
Coord A exon
chr19:54372684-54372795
Coord C2 exon
chr19:54372796-54372987
Length
112 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCGCCCCGGCTTCTTTTCAGGTG
3' ss Score
9.43
Exon sequences
Seq C1 exon
GATCTCGGTGATGAGCTCCTATTTGCCAAACCAAACATCTTCTGCCACTTTGCTCACGGGATCGGAGACCCCAAATACCTGCCGGTGACCGACCTGGCTCCGCTGAACAAGCTTCTGGTGGAAGTCCTGGACAGTTACAATGAGGTCAACGCGGTCATGAACCTG
Seq A exon
GTGAGCCCAGGGGTCGAGTGGGCAGCAGTGGGGCTGGGGCCGGGGGACGAGCGAGGGAGGCGCGTCCTGCCGGTGAGACACCTGGGGTCTCTCCGCCCCGGCTTCTTTTCAG
Seq C2 exon
GTGCTTTTCGAGGATGCGGTGGCCCACATCTGCAGGATCAACCGCATCCTGGAGTCCCCGCGGGGTAACGCCCTGCTGGTGGGGGTGGGCGGCAGCGGCAAGCAGAGCCTCTCCCGCCTGGCCGCGTACATCAGCGCCCTGGACGTGTTCCAGATTACCCTCAAGAAGGGCTACGGGATCCCAGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(3.4=16.4)
A:
NA
C2:
PF127802=AAA_8=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAAGTCCTGGACAGTT
R:
CTTGAGGTCTGGGATCCCGTA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development