HsaINT0049559 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76471360-76471915:-
Coord C1 exon
chr17:76471751-76471915
Coord A exon
chr17:76471552-76471750
Coord C2 exon
chr17:76471360-76471551
Length
199 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
GATCTCTCCGGTTTCTGCAGGTG
3' ss Score
9.51
Exon sequences
Seq C1 exon
GATCTTGGTGATGAACTCTTATTTGCCAAGCCAAATATCTTCTGCCACTTTGCTCAAGGGATTGGCGATCCCAAATATGTTCCTGTAACCGACATGGCTCCTCTGAACAAGCTCCTCGTGGACGTCCTGGACAGCTACAATGAAGTTAATGCAGTCATGAATTTG
Seq A exon
GTGAGCAGGCTGGAGCTGATAGCAAGGGCACGGGACCTGGACCGGGTCACCCTCTCCGGTTGCATTATCGACATCCGAGTGGCATTGTGTGGGGCTGCGTGGCACACAGTGCACACCTCAGCATGTGCAGAGTCCGTGCTGGTGACAGAGGTGATTCCAGGTGCTACAAGATGTTGTGGGATCTCTCCGGTTTCTGCAG
Seq C2 exon
GTGCTGTTTGAGGACGCCGTGGCTCACATCTGCAGGATTAATCGCATCCTGGAGTCTCCCCGGGGGAATGCCCTGCTGGTGGGGGTGGGCGGCAGTGGCAAACAGAGCCTCTCCCGCCTGGCAGCGTACATCAGCGGGCTTGACGTGTTTCAGATCACCCTCAAGAAGGGCTACGGGATCCCCGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:53
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(3.4=16.4)
A:
NA
C2:
PF127802=AAA_8=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACAAGCTCCTCGTGGAC
R:
GGATCCCGTAGCCCTTCTTGA
Band lengths:
244-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)