MmuINT0050775 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117927601-117928369:-
Coord C1 exon
chr11:117928205-117928369
Coord A exon
chr11:117927793-117928204
Coord C2 exon
chr11:117927601-117927792
Length
412 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GACCCCTCTGATCTCCCCAGGTG
3' ss Score
10.2
Exon sequences
Seq C1 exon
GATCTTGGGGAGGAGAATCTCTTTGCCAAACCCAACATCTTCTGCCACTTTACGCAAGGAATCGGTGACCCCAAGTACTTCCCCGTCACGGATGTGGCACAACTGAACAAGCTGCTGAAGGACGTCCTGGACAGTTACAACGAGGTTAACGCAGTCATGAACCTG
Seq A exon
GTGAGGAGCTCTGGAGCCCGTCCGTGGCCCGCACAAGTGGCCAGGACACAGATCTCCTTCCACGTCACCGAGCCACAGTGTCCCCTATCCACACAGACACCTTCCACGGCCCCTGGTGGGCACCCCTGTGTTTCCTTCACGCATATCTGCTATAAGTGTAATCTATAAGCAAAACCACATTTGAGACCACAGCTCAGTGGGACCATGTGTCACTGGCACCTTCCAGGAATCAGCCAAGGCCTGTGCTCTCTACCGTGTTGGCCCACACAGGCGATGACCTCTGAGCATAAGTGACTGGTCATGTGATCTTGATGAGCACCTGGGTCACCCCAGGGGTGACCCCTTGACCTTGGCAAGCAAGGGTCTGCGCCCTCCAGAGGGGTAGCACCAATGACCCCTCTGATCTCCCCAG
Seq C2 exon
GTGCTGTTTGAGGATGCGGTGGCTCACATCTGCAAGATCAACCGTATCCTGGAGTCTCCTCGGGGAAATGCCCTGTTGGTGGGCGTGGGTGGCAGTGGGAAGCAGAGCCTCTCGCGCCTAGCCGCCTACATCAGTGCCCTGGACGTCTTCCAGATCACACTCAAGAAAGGCTACGCAATCCCAGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:53
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(3.4=16.4)
A:
NA
C2:
PF127802=AAA_8=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGGAGAATCTCTTTGCC
R:
TTGAGGTCTGGGATTGCGTAG
Band lengths:
350-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: