RnoINT0048821 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107076249-107076917:-
Coord C1 exon
chr10:107076753-107076917
Coord A exon
chr10:107076441-107076752
Coord C2 exon
chr10:107076249-107076440
Length
312 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GACCCCTCTGACCTCCCCAGGTG
3' ss Score
9.7
Exon sequences
Seq C1 exon
GACCTCGGGGAAGAGCACCTCTTCGCCAAACCCAACATCTTCTGCCACTTTACACAAGGGATCGGGGACCCCAAGTACTTCCCCGTCACGGACGTGGCGCACCTGAACAAGCTTCTCAAAGACGTCCTGGACAGTTACAACGAAGTCAACGCGGTCATGAACCTG
Seq A exon
GTGAGTGGGCACCCAAAACTGCCCTGGTGTTTCCTTCACACACAATCAGTTCTAAGTGTAGTCCTATAAACAAAACCATTATTTGAAACCAGGCTCTCCAGGGCCACATGTCATTATCACCTGCCAGGGATAGGTTAAGGCCTGGGCTCCCCACCGGGTTGGGCCAGGCAAGTGACTTGCTCTGAGCCTAAGTGACTGGTCATGTGACATTGATGGAGCACCTGGGATCTCCACAGGGGTGACCCCATGACCCTGGCAAGGGCCTGTGCTCTCCAGAGCAGATAGCACCTGTGACCCCTCTGACCTCCCCAG
Seq C2 exon
GTGCTGTTCGAGGACGCCGTGGCACACATCTGCAGGATCAACCGTATCCTGGAGTCCCCTCGGGGAAACGCCCTGTTGGTGGGCGTGGGTGGCAGTGGAAAACAGAGCCTGTCCCGCCTAGCCGCCTACATCAGCGCCCTGGACGTCTTCCAGATCACACTCAAGAAAGGCTATGCGATCCCAGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(3.4=16.4)
A:
NA
C2:
PF127802=AAA_8=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCACCTCTTCGCCAAAC
R:
TGAGGTCTGGGATCGCATAGC
Band lengths:
345-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]