GgaINT1011518 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10087147-10087607:+
Coord C1 exon
chr18:10087147-10087311
Coord A exon
chr18:10087312-10087415
Coord C2 exon
chr18:10087416-10087607
Length
104 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTCTCTCACGTTTTCCTTAGGTG
3' ss Score
11.59
Exon sequences
Seq C1 exon
GACCTCAACGAAGAGACGGTGTTTGCCAAGCCCAACATCTACTGCCACTTCGCCGAGGGCATCAGGGAGCCCAAGTACCTGCCAGTGCCGAGCTGGCCATCACTCAACAAGCTGCTGGGAGAGGCCTTGGACAGCTACAATGAAGTCAATGCGGCAATGAACCTG
Seq A exon
GTGAGCTCACGCTGCTGAAGGGGGCGGCACTGCGTGAATTGGGGCGTTCGCTGCTTTAGGCACTGTGATTCAGGATAGTAATCCCTCTCTCACGTTTTCCTTAG
Seq C2 exon
GTGCTCTTTGAGGACGCAGTGTCTCACATTTGCAGAATCAGTCGGATCCTGGAGTCCCCCCGAGGCAACGCGCTGCTGGTGGGGGTGGGGGGCAGCGGGAAGCAGAGCCTTTCCCGGCTCGCTGCTTACATCAGCTCTCTAGACGTGTTTCAGATGACACTGAGGAAGGGCTATGGCATCCCAGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(3.4=16.4)
A:
NA
C2:
PF127802=AAA_8=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAACAAGCTGCTGGGAGAG
R:
ATGCCATAGCCCTTCCTCAGT
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]