BtaINT0050480 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28132811-28133587:+
Coord C1 exon
chr19:28132811-28132925
Coord A exon
chr19:28132926-28133410
Coord C2 exon
chr19:28133411-28133587
Length
485 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CACACTACCTCCTGCTTCAGGCC
3' ss Score
7.05
Exon sequences
Seq C1 exon
CTTCTCACTGACAGACCTAGAAAAAGGCATCCAGGGCCTCATCGTCATGTCTACCAGCCTGGAAGAGATTTTCAATTGCATTTTTGATGCCCATGTCCCTCCGCTCTGGGGAAAG
Seq A exon
GTAAGATTATCTCACTGTTGATCCTTCTCCAACAATGAACTCTACTTTTACTCCTGGACCTGCAGCCTCCTGGTCCTAGGGAAGCCTATAGCAGAAAGCAGTGAGCCTGGGCTTCGGAGTCAGACAGGTTCAAGGTTGAAATCTGACTCTGCCCTTCACTGACTGACTTTGCAAAGTTGTTAACATAGAAACTTACCCAGGGCAAGTCCCTAAGTTTCTCCAAGGATGTTTCAAGGGTTCCTAGTACTGTGCACCTTAAAAGGTGTTTCATTAATGGTAACTGGTTAGCATTGCTGGTGCTGTTGTTAATAGTTGTCGTTTTATGCTTCTTTCCTGGAAATTGGCTTTTGGAGAGCTTTGCTGAACTATGGTTTGGGGAACAGGGGCTGACACTATATATTCTTCTATCTGCTTCAAATGTTCACAGTAAGAATTTGAATGCATGAATAAGTGAATGAATAAACACACACTACCTCCTGCTTCAG
Seq C2 exon
GCCTACCCCTCACAGAAGCCATTGGCTTCATGGACCCGGGACTTGGCCATGCGTGTGGAGCAGTTTGAGATGTGGGCCAGCCGTGCACGGCCTCCTGTGATCTTCTGGCTGTCTGGCTTCACCTTTCCCACTGGCTTCCTCACTGCCGTGCTGCAGTCTTCAGCTCGCCAAAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605:ENSBTAT00000006277:81
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGACAGACCTAGAAAAAGGC
R:
TGTTTTGGCGAGCTGAAGACT
Band lengths:
286-771
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development