RnoINT0048939 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56029944-56030842:-
Coord C1 exon
chr10:56030728-56030842
Coord A exon
chr10:56030121-56030727
Coord C2 exon
chr10:56029944-56030120
Length
607 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGC
5' ss Score
2.46
3' ss Seq
TGCACTCCCTCCTTTCTCAGGTA
3' ss Score
11.55
Exon sequences
Seq C1 exon
GTTCTCACTGACAGACTTAGAGAAGGGTATCCAGGGCCTCATTGTCATGTCAACAAGCCTGGAAGAGATTTTCAACTGCATATTTGATGCTCATGTCCCTCCGCTGTGGGGAAAG
Seq A exon
GCAAGCTTCCCTGTCCCCCACACTGGCAATCCTAACCCTGAACCTCTCTTCACTTCATCCTCGGGAGGCATGTAGTGGACTTCAAAGAGCCTGGAGTTCCAGTCCAGACAGGTTCAAGGTGTTGAGATCTGGTTCCAACATCCACTGACTACAGAACAGATGTAGTCACATTAATTTTCCCAAAGGTATTTCAAAGATACTCCCCAACCCCAAATACTGTGCATGGCACTCAACAGGTACCTGGTCACTGTGGAGCAAGCATCCCTCATTCAAAAGCCCAAAATATGAACCTTTCTGAGTACCAAACACAATGCTCAAAAGACTTCAGATTATTAATTTTCAAATTAGGGATCCTCAACCAGTAGTCTATGCAAATATTCCACGGGCACCCTGAAGAACCCATGAGAAATCTGAAAGTCTGCTGGCCTCATGCATTTTGGATAAAGGATAATCTTGTAGTGGTATTATTATTAAGTGGTTGCTATTCTATGCTTTTCCCCTGGGAGTTAACTTTTGGAGAGCTTTGGCTAACTGTAGTTGGTGATGCCCCAGGTGTTCTGAATAAAAGCAACATGGACAGAGGGACATGCACTCCCTCCTTTCTCAG
Seq C2 exon
GTATATCCCTCACAGAAGCCTTTGGCGTCATGGACCCGGGACCTGGCTGTGCGTGTGGAACAGTTTGAAACATGGGCCAATCGAGCCCACCCTCCTGTGCTCTTCTGGCTGTCCGGCTTTACTTTCCCTACTGGTTTCCTTACTGCTGTGCTGCAATCTGCTGCTCGACAAAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:84
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACTGACAGACTTAGAGAAGGG
R:
TTTTGTCGAGCAGCAGATTGC
Band lengths:
286-893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]