BtaINT0050502 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19099956-19102129:-
Coord C1 exon
chr25:19101928-19102129
Coord A exon
chr25:19100049-19101927
Coord C2 exon
chr25:19099956-19100048
Length
1879 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATT
5' ss Score
3.64
3' ss Seq
CTGTCTGTCTCAACCTGCAGGGC
3' ss Score
12.01
Exon sequences
Seq C1 exon
GTTCTTCTTCCTATCAAATGATGAGCTGCTGGAGATATTGTCAGAGACAAAGGACCCTCTCCGGGTGCAGCCACACTTGAAGAAGTGCTTTGAAGGAATTGCCAAGCTGGAGTTTACAGACAGTCTGGAGATTGTGGGCATGATCAGCTCAGAAAAAGAAATCATTCCATTCAAACAGAAAATCTACCCAGCTCAAGCCAAA
Seq A exon
GTAATTCCATTTACCCATTTTTGAGTTCTTTTCTTTATAACAGCAAAACAGAGAGAAGCAGATTATATGTTGGTTAAGCATTTAGACTCTGGTTTCAGACTGAGTATGGAACATTTAGATTCCATAACTTAATGATGGGATAACTTTGGGGCTTCCCTGATGGTTCAGCAGGTAAAGAATCTGCCAGCAATACAGGAGACACAGGAGATGTGGGTTCGATCCCTGGGTCAGGAAGATACTCTGGAGAAGGAAACGGCAACCAATCCAGTATTCTTGCCTGAAAAATCCCATGGGCAGAGGAGCCTGGCAGGCTACAGGCCAATGGGTCACAGAGTCGGACATGACTGAGAGACTAAGCACACAGCACAGCCGACTTTGGGAACTAATCTTTCTGGGTCTGCTTGTTCATCTCTAAGATGGAGATTATACTGCAATTCACTTGGCACCCTAAATTTGTGGAAAGATTTCAGTAAGATTTGATGTGGAGACAGTAGCAGGAACCAGATCCAAAACAACTAATACTGTTTAAATCCCCATGAGCAGATCTAAATTCAAAGAGATCCAGTCAGATCAATAAACTGTCCAGTAGGGGCAGGTGTTTTTAAAGGTCAATAATACATCATGGATTTAATGCCATTTAGCTCACATTTTTAATACATGTGCCCTTATATAACGAGTAAAATGTGAGTTACTTCCACTCTTGCTGAACATGACAGCACTTCACAGTAGAAGTAGACTAGCATTCTTGGCCTTGCTCGGTAGACCATTTTTGCCACCCACACATTTAAGTTTCAGCAACTAGGAATTACACCTTGGAACCAGACACGAGCTAGCTTACAAGCACTTGAGGTCAGCAGGTACAGTTACCTGAAACTCGAACACTGAATAGTATGCTGCACATTCTTATTACCTGTAGACATTCTAAAAACTCCATTTTCCCTGGTTGCATCCCATACCAATCAAATCAGAATGTCCGGGAGTGGGGTTCAGGAATCCATAACTTTTAAAGAACTCCAGATGATGCCAATGCTCAGCAAAGTTTGAGGACCCCTGGAATAATGCAAGAATTAAAACTGTTCAATTAGAAATGGACAGTTTATTTTATGAACTTGTAGACTAAAAAAATGTACCACCTAAAAGTTGAGTTCTGTTTTATTCAGCATACGTTCTTAGGATGTCAAGTTAGGGAGGCAGCATCTCAAGTAAGCCTGAGAAAACTGCTGGAGGTTGGAGGGGAGCCAGGATATTTAGGAGTTTTGTGACTTCTGAATGTCAAAAGATTACTGTTAATGAAAGAAAACCAGATAGCACAGGTTAAGGAATTTATTGTTTTTCTATGTATGAGAAGATGCAAGAGTCTGGGCTCACTGAAATCAGTCCTTTGATATCCACCTCAGCTATCTGGGGCCAGTATCCTGTGTTTTCACATCCTGAGTTTCCTCAAGCTGCACCTTTGGGGGTGACTGCAGCTTGTAGGCAGGTATTCTTTGTCTCCTTCCTGAGTTCCTTTAGGGTTCACCTTCAGGGGATACAGGGTGGCTGCAATTGCTGGTGGCTGCAACTTCTTTAATTAATGACATGACAGGCAATATCTTATTTCTCAATCTAAAGTATAAATGTGTCAGTTGTCTCCTGTGAAGTTGTCTTTCAGAAAATGTGAAAGAAATGTATGTTAAAAAGTCTCTATTGTCCTTTTTTTGAAACATACACTTCTGAGAATACAGTAAATAAGTTTGACCAATAGTTAAAGAATATTGGCTTGAAGGTGTGCAAACCTTTGGCCTCCCTCCAGCCCTTTGCTGAGAGAAAGCTGGCCTCTGCCCATGGTCCCTCCCTCCAGGCTTGGTTAACTGTCCTCTCTGTCTGTCTCAACCTGCAG
Seq C2 exon
GGCATGGTGGAAAAATGGCTCCTGCAGGTGGAACAGATGATGCTTGCCAGTATGCAGGAAGTTATTAAACTTGGGATTGAAGCATATGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560:ENSBTAT00000024702:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.3=100)
A:
NA
C2:
PF083938=DHC_N2=PD(7.0=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTTCTTCCTATCAAATGATGAGC
R:
TGGACATATGCTTCAATCCCAAGT
Band lengths:
294-2173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]