HsaINT0049691 @ hg19
Intron Retention
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21071585-21074004:-
Coord C1 exon
chr16:21073803-21074004
Coord A exon
chr16:21071678-21073802
Coord C2 exon
chr16:21071585-21071677
Length
2125 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
CTCTCTGTCTTGCTCCATAGGGC
3' ss Score
13.02
Exon sequences
Seq C1 exon
ATTCTTCTTCCTATCAAACGATGAGCTGCTGGAAATCTTGTCCGAGACAAAGGACCCTCTCCGAGTGCAGCCGCACTTGAAGAAGTGCTTTGAAGGAATTGCCAAGCTTGAGTTTACAGACAATCTGGAAATTGTGGGCATGATCAGCTCGGAAAAAGAAACTGTTCCATTCATACAGAAAATCTACCCAGCTAATGCCAAG
Seq A exon
GTAACTCCTCTTACCCATTTTTGGTTCTTTTCTCCATAACAGAGTAAATCAGAGAGCGTATTGGCTAAGCACTGGGACTAAGCACCAGACTGCCTGGGGTATGGAACACTTGGGTTCTACGATGTAACGACTGAAGATTTGGGGAAGTTACTCAATCTTTCTGAGTCTCAGTGTACCCATCTCTAAGATGGGGATTCCACTGCAATCCACATGACATATTAAATTTGTGGATTTTAACCCAACTCGATGTGGAGTCAATTGCAGGAATCAGATCCAAACAGCCGATGCTGTTTAGATTTCCATGTGCAGAGTTCAGTTGAAAGTGATTCAGTTAGACAGGTAGCTTCCTGGGGCATTCATTTTAAAGATCAATAAAACATCATAGAATCAATGAGAGCTATAATGCAACTTAACTCAGGTTTTCATACATATGTCCTTATATAATGAGTAAAGTATAAATTACTTCCATTTCTGCTCAGTGACAGCACCCTCAAGTGGAAATAGACAAGCAAGCTGAGCCTTGCTTTGTTGACTGTTTTTGCCACCCACGCGTATAAACTGCAGCAACCAGGAGTCACATTACCAATGCAGACACCAGCTAGCTTACAAGCACCTGAAGTCAATAGCTACAGTTACCTGAAATTCTAACACTGAATAATTTGGGGCATATTTGAATTTCCCTATGGAGTTTTGATCAAAATCCAAATGACCAGGTTGCATCCCATACCAATTAAATCAGGAAGTCTAGGGGTGGGAGTCAGTCATCAGTATTTTTTAAAAGATCTCCAAGTGATTTCAAGGAACAGCAAAGTTTGAGACCCACTGGAATAATGCATGAATCAGAGCTGTTCATTTAAAAGATGCAATTTATTTTATGAACTGACATAAATGTTTCATTTGCCTTCTGAGAAGTTGTCTGTTTCAGAAAATGACATGAAAGTAATGCGTATTAAAAATGGGCCGGGCGTGGTGGCTTGCACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTAAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAAACCCTGTCTCTACTAAAAAGCCAGGTGTAGTGGCACATGCTGTAATCCCAGCGACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAAGTTGCAATGAGCCGAGATCACACCATTGCACTCCAGCCTTGGGTGACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGGCCTATCGCCCCTTTAGAAGGCATATGCTTCTGAGAATACAGAAAATAAGTGTCAAGCAGATAAAGAATATTGGAATATTGGCTGGGGCCAAGGCCAGGTGCCATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGAGGATCTCTTGAGGCCAGGAAATCAAGACCAGCCTGGGCAACATAGAGAGACCACGGCTCTACAGAAAAATTTAAAAGTTAGCCGGGCATGGTGGCATGTGCCTGTAGTCCCAGTTACTCAGGAGGCTGAGTCAGGAGAGTCACTTGGGCCCAGGAGTTCAAGGCTGCAGTGAGCCAGGATCGTGCCACCGCACTCCAGTCTGGATGACAGAGCAAGGCCCTGTCTCTCTCTATAAAAAAAAAAAAAAAAAAAAGAAGAGACCAGGCGCAGTGGTTCACACCTGTAATCCCAGCACTTTGGAGGCCGAGGTGGGCAGATCACGAGGTCAGGAGGTCAAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAATTCATCAGCCGCGGTGGTGGTGCACGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCAGGGAGTCGGAGGTTGCAGTGAGCCAAGATCATGACAGTGCACTCCAGCCTGGTGACAGAGCGAGACTCTGTATCAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAGAACGGGGAGACAGAGAATATTGACTTGAAAAGGTGCCAAGCCTTTGGCATCCCTCCAGCCGTGTCCAGAGAGAAAGCTGTGTTCTGCCCACTCTCCCTCCCTCTGGGCTTTGGTTGACTGCTGCACCCTCTCTCTGTCTTGCTCCATAG
Seq C2 exon
GGCATGGTGGAAAAGTGGCTCCAGCAGGTGGAGCAGATGATGCTGGCCAGTATGCGAGAAGTCATTGGACTTGGGATTGAAGCATATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-DNAH3:NM_017539:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.3=100)
A:
NA
C2:
PF083938=DHC_N2=PD(7.1=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)