DreINT0009288 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39574543-39577124:+
Coord C1 exon
chr24:39574543-39574744
Coord A exon
chr24:39574745-39577031
Coord C2 exon
chr24:39577032-39577124
Length
2287 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTTGTAATGTGAATTTTAGGGA
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTTTTTCTTCCTGTCTAATGATGAGATGTTGGAGATCTTGTCTGAGACGAAGGATCCGCTGCGTGTTCAGCCTCATCTTAAAAAGTGTTTTGAGGGCATCGCTAAGCTAGAATTCACCCCTGACCTGGAGATCACAGGAATGATCAGCTCAGAGAAAGAGATTGTCCCCTTAATAGAGACCATCTACCCAGTTAAAGCTAAG
Seq A exon
GTAAGGGCAGAGAGTTGTATAAAATGTATTTCCCTCACATAGTCATGTAAAGTTTTTTACTGATAGCTGAACTCTATAGACATTATGTGGTTACTGTAAAATCTACATAAAAAGTGAAGTTAAAATTATCATATTTGGTAAAGTATTTAATCATTTCAATCTGTCATTTGATTTATTAAAATTGTTGTTTTATTTAGCAGTTAATAATAGCATTTACAATTACTACGGAACCCCGGAAGGGACGTAGTGGAGGGAAAAAAAATTGCCTGGGTGAAAAAAATAAATGGTTGGGAGGAAAATATATATTTCTAAGTTTTTGCGTTCTCTCGCAAAACTGTTTCTTCACAAACACTTCCTGTTTACTTCACTCCCGTAAACCCTCCCGTTTTTGGCCGTAATTCTCTGGTATTTTACCATTCTATCACACTTTCTTTACATTAATACTGTGCGTCGATCGTCGCCTTTCATATGCAACCTCTGAACCAGTGAATGCATGTATAAGCGCTGACTAACAGACGCGCTCCGTACAATAAACTGATCCCAGATCAGCTTCTGTACACGCCATTTACAGAGGAGCACATTTACAGAGGAGTACCTGTTTAAACAGACAAATACACTCAATAATATGTAAACATCTCCGTCCTGCATGTTTTATTTTAAACAGCTCATTTTCTGTTAAATGAGCGCAAACAGTTTCTAAAGTAATGGAATGCTTTCATTATTAATCTGTGCATTCTTACAGTGACACCTCTGTTCAGGGGTGGACTGGGACTAAAAATCAGCCCTGGCACTGTAGCCACACCAGCCCATATTACCACACCGACACAGCCCTATCCACGGACACGCACATTTACTACTTATATTGGTGCACAGATGGTGAAATAATATAACCAGTACCTTATGTATTATATATATTTAAACTTTTAATGCATGTGACTGAAACAAAAACAACCCATTTATAACAAATTTATACATCAATCATTTCATTTATTCATTTTCTTTTCAGCTTAGTCCCTTTATTAATCTGAGATCGCCACAGCAAAATGAACCACTGACTTTTTCAGCATATGTGTTACCCATATGTGTAAACCAATTCACCTATAGCTCGTGTTTGGACTTGTGAGGGAAACCGGGAGAAAACCCACGCGAACATGCAAACTCCACACTAAAACACCAACTGACCCAGCCAAGGCTTGAACCATTGACCTTCTTGCTGTGAGGCGACAGTGCTACCCACTGCGCTGCCCCCTTTCGAGACTATTTCAGTTAATTTTATGCATTTGGCAGCGTCTGATTTTAGAGCAATCTTTTGCTTTCTCTGAGCTTTTTGGCACCACCTTTCCTTTTTTGCAGTCCATCTCTGACAATTAGGTTGTGCTGCACTTACTGTTTGTTTGACATTCTTGCCAGATTTTGATTACATCCACGTAACCTCTGATTGGGTCGGCCCCTCTCTGATTGGGTCGGCCCCTCTCGAAACCAGCAAGATTGGGCCAATGCTTAACATTTATTATTATCATTACTATTATCATCATCATATTCACTTCTTGCAAGAGATGAAAGCTGCCTGCATGTAAAAACAATACATATAAAAATTTAAAAATAGCACACCGGCCCACATTTTAAAATAAAAGGTCCGGCCCTTCTGGCATTTGCCATAATTGCCAGATGGCCAGTCCACCCCTGCCTCTGTTATAAAACAAAACATGAGATTCATTTGCTGCTCACTTGTTTGATAACAGATGTCACTTTAAATAGCGTGTACAGACGCTGAGCTGGGATCAGTTTATTGTACGGAGCGCGTCTGTCAGTCAGCGCTTATACATGCATTCACTGGTTCAGAGGTTGCATATGAAAGGCGACGATCGACGCACAGTATTAATGTAAAGAAAGTGGGATAGAATGGTAAAATATGGGAGAATTTCGACAAAAACAGAAGGGTTTACGTGAGTGAAGTGAACAGGAAGTGTTTGTGAAGAAACAGTTTTGCGAGAGAACAACATTTTGCAAGAGAACGCAAAAACTTTAAAAAAATATATATATTTTCCTCCCATCCATTTTTTTCTTTCACCCATTATTTTTTCTTTCACCCAGCCAATTTTTTTCTCCTCCACATCCTTTTTGGGGTTTCGTAAATAACAGCAGTCACAGTATAGTGCAAGAAATTACCTTCATAAATTCTTGATTAAATTGACTTTGGTTTATGGGAAAACATAAAAAAAAGCTTTTGCATGACAAATGTTTGTGTGATTTAGCCACATGTACAGCTTTGTAATGTGAATTTTAG
Seq C2 exon
GGAATGGTCGAGAAGTGGCTTCTGCAGGTTGAAAACACAATGCTGATGAGTATCAGAGCTGTCATAAAACAAGGAATGGAGCAGTACTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.4=100)
A:
NA
C2:
PF083938=DHC_N2=PD(7.5=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]