GgaINT0013842 @ galGal4
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15019158-15020750:-
Coord C1 exon
chr14:15020549-15020750
Coord A exon
chr14:15019251-15020548
Coord C2 exon
chr14:15019158-15019250
Length
1298 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATT
5' ss Score
3.64
3' ss Seq
ACTGCTTTTCCTACCTGAAGGGC
3' ss Score
7.68
Exon sequences
Seq C1 exon
ATTCTTTTTCCTGTCTAATGATGAGCTGCTGGAAATACTCTCTGAAACGAAGGATCCCCTTCGAGTGCAGCCACATTTAAAGAAGTGTTTCGAGGGAATTGCTCAGCTGGAGTTCACTGAGAATTTGGAGATTCTAGGCATGATCAGTTCGGAGAAGGAAATTGTTCCTTTCATAGAAAAAATCTATCCTACAAATGCAAAA
Seq A exon
GTAATTTTTTTTTTCTTACTATGATATCAAATGTATGCTTTGCCTAAATTCTATGTTTTTGGGAATGAAATTTAAAACATTTAGGATGAGATTGTGAAAGGTGTTTAGGGATGGAAAACAAAAAAGGAATTCCTGCAAAAATGAGTGAGGTGTAACAGTTTGGTAAATTCCTCGGGGTGCTTCTCTGCCTCTTGACGCACACACTGCTTAGGAAATATGGCACAAATGCTATGCATACGTCTGTCTAAATGTTCATGTGTATGGATAAGTGTGCTTATAGAACATGGCACAGCACGGCTGAAGCACAGAGGAATGAGGGCAAAGAGGAATGCCACCGAGGAGGTGCAGCCCTCGGTCAGAGAGCGGCTGGGTAGCGAAGCCCGGGGACTGCCACAGTCTTTGTCCTGCAGGGCAGACTGTGCTATAGAATGGTTTGGGCTGGAGGGATCCTACTGTCTGAACACTGTTCTGTTATGCTCGTTAGACCTGCATTAAGCCTAGCAACAAAAAGCAGGAAAGCAGCACGATAGGAAACGGCAGGAAGACAAGGGGAAAAAATGTTGGATCTTGAATGATGATCTCTGTACTCCCGTGGAAGCTGTTTCCCCAGCTGCTGTACCAGAGGGGTAACTTGCTTCATCTCAGCTGTTGCTAAAACTAGTGGTAATTCACGAGACAATTTGTACTCTAAATTATAATGCTGTGCTCTAAGTACTTCCAAGATTGTCGAAGGTGAAATCAGTTCCTCACAATTCCACTGTTTGTTGCAGTCTTCACATTTGTAAGTGCTGAGAAGTATCTGGCCAGTTGGACTGAATGATCTTAGGGGTCTTTTCCAACCTTGATGATTCTTGGATTTTATCTCATTTCCTCCTTTTTCTGTTCTCAGCCTGAAGGTATGAAGGTGAATTACTGAATGGTAACCAGAAAGAGATGAGAGGTGGGGAATGTTGTGAGGTCCGCATACCTCCTTTTATCCCCTGAATCTTCCAGGAACAAAATGTCCCATGTTAAAATGACCAAGCTTATCTGACTGTGCCAGCTGGCACGTGCAGTTTTCTTTTATGGGAAGCCCTGTGTGTAGATTCAGCTGGATTCTCTGCAGTTAGCTGATTTGCCTCCCTAAAGGCAGTTTTCAGCTGCAGAAGTGTTTGTCAGAATCTGCAAAATTTCTAGCTACTTTTTCTCCTAAATGAGAGAAAAGTCTATTAGAGTTTTATCCATTTCAAAGGGTTTGCACTTTAAAAAGAACATAATGAGAGAATGTTTATTGATTTAACTGCTTTTCCTACCTGAAG
Seq C2 exon
GGCATGGTAGAAAAATGGCTTTTGCAAGTTGAGGAAATGATGCTGGCCAGCGTAAGACAAGTTCTTCAAGATGGCATAGAAGGATACGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.2=100)
A:
NA
C2:
PF083938=DHC_N2=PD(7.0=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTTTCCTGTCTAATGATGAGCT
R:
CTTGACGTATCCTTCTATGCCA
Band lengths:
294-1592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]