BtaINT0050554 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59332945-59340237:+
Coord C1 exon
chr20:59332945-59333090
Coord A exon
chr20:59333091-59340071
Coord C2 exon
chr20:59340072-59340237
Length
6981 bp
Sequences
Splice sites
5' ss Seq
AAGGTTATT
5' ss Score
4.15
3' ss Seq
ATGCTATTTTTTTTTGATAGGAC
3' ss Score
7.81
Exon sequences
Seq C1 exon
GGGACCTGGAGTTGCTGCTCGACAGGGTCAATGATTTGATCGAGTTCCGCATTGACGCCATCCTGGAAGAAATGAGCAGCACTCCTCTTTGTCAGCTCCCTGGGGAGGAGCCACTTACCTGCGAAGAGTTTCTCCAGATGACAAAG
Seq A exon
GTTATTAGAAGATTGATGCTTTTATTTAAACTTTATTTTGTGATTCATTTTTCTATAAAGGGCATTTTGGGAAACATCAATTGCATTTTTTTTTTTTTTCTCTTCCCATGACTGGTCTGTGATGGATGTTCTTTAAACGAGGAGCCTTCCGACAATAATTTGAAAATGAAGAGGAATGTACCCGAGGGGTCAGGTAGACATGAAGAACAAATCATTTCTTTTCAGATCAGTAAGAGAGAAATTGCCACGGAATACATTTCTCATTTTCCCACAGTTTTGAAGTGTAAGCCACTCGGTCGTGTCCTATTCTTTGTGACCCATGTACCGTAGTCAGCCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATGTAGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAACTCAGGGATCGAACCCAAGTCTCCCACATTGCAAGGAGATTCTTTACTCTCTGAGCCACCAAGGAAGCCCATAGAGCTATTTTGTTGAAGAGCTTCCAGTTCTAGTTCTAGCTTCTAGCTAGGGTTCATTAATAAAATAGTTGTTTGAAACAGCTTCTGCATAGAATTTCCTCTTTAGACATTTCTGTAGAGCAGCATTTCCCAAACTGGTGTTCTGTGGTACATGGTTCTGGATCCATTGCTGGGGAACCTGGAAAAGACTAGGTCCGAGTTCAGTTGGCCTGGGGTCAAGACTGCTCTCCTTTCCCCTCCAGGTTCTGTTCACATTAATGTTTTAGAATAAAGACCTTCAGATGGTCTCCTGGGAAAGGGTCTAGTTAACTCTCTTTAATCCATTATTTCTCAAACATTTGCAAAGGGGACACTTTCTTCCCTGTGCCATAATTAGGATCCTGGGAACAGTGTTCCATGAAGTGCCCCTTTGGGAAAGTCACTTTAGCATCATTTACAACATTTCCAATGGGCATCCTGATTATAAAAACTCATCGGTGGTGACTTTAATATGGTATGTCAGGAGTCCAGAAGACCATCCCCACTGGAAGGACTCATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCCCCCTCCCACCCCACCATCACCCACTGACCCCCAGCAAAAGAAATGCAGTCAAGAGTGTGCAATATTTCTGCCCAGGAAAGCCCGTTAAGAGACTTCATGCCCAAGGTATTGACTGGGTCTCATCACAGAGGTGGGCTTCCCTTGTGGTTCAGCTGGTAAAGAATCTGCCTGCAATGCGGGAGACCTGGGTTCAGTCTCTGGGTTGGGAAGATCCCCTGGAGAAAGGAATGGCTATCCACTCCAGTATAGTGGCCTGGAGAATTCCATGGACTGTATAGTCCATGGGGTTGCAAAGAGATGGACATGACTGAGCGACTTTCCCTTTCCCTTTTCATCACACAGGTGCTCTCTGCCTAGCATGCACCAAAATTCCAGACACCCAGATGGAAAGCTGGTTGGCAAGATAAACCACACTGTTTGCCCAGAGAGTCTGAGCACAGAGAGGCACTCTCTGTAGCCTGTAGGAACCTTCCTAAAATCCAAGCTCCCAGACACCAGCCAGAGATCCACCTCATTAGCAGGAGAACAATCTCAGGCCTGCCATGTTAACCTTTTTCTGCATATATAGTCATCTTCAGTTTATATTAAATTTGTATGTAGTCAAAATTAAATGTTCACAATTTAGAAATTTCTCCATCATCCTTCTCTTAGACTCACTGTCTGTGTACAGACCCTAAATTGTACCTCTTCTCTTTTGCTCATTTGCTGTACTCCCACTCTGAGAAATTATTGGGCTCCATGGTTTTTAATATTACCCCACTGTACAATTGCACTCATCTCACATGCTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATACGTGAACTATGAACTTCCAGATGTTCAAGCTGGTTTTAGAAAAGTCAGAGGAACCAGAGATCTAATTGCCAACATCTACTGGATCATTGAAAAAGCAAGATAATTCCAAAAAACACATCTATTCCTGCTTTATTGACTATGCCAAAGCCTTTGAGTCTGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAATAGCAGACCACCTGACCTGCCTCTTGAGAAATCTGTATGAAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTACGTCAAGGCTGTATAATGTCACCCTAATTATTTAACTTCTGTGCAGAGTACATCATGAGAAACGCTGGGCTGGAGGAAGCACAAGTGGAATCAAGATTGCCGGGAGAAATATCAATAACCTCAGATATACAGATGACAGCACCCTTATGGCAGAAAGTGAAGAAGAACTAAAAAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAACTCAACATTCAGAAAACTAAGATCATGGCATCGGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGATGGATACAGTGGCTAACTTTATTTTTCTGGGCTCCAAAATCACTGTGGATAATGATTGCAGCCATGAAATTAAAGGACACTTGCTCCTCTGAAGGAAAGTTATGACCAACCCAGATAGCATATTAAAAAGCAGAGACATTATTTTGCCAACAAAAGTCCATCTAGTCAAGGCTATGGTTTTTCTAGTGGTCATGTATGGATGTGAGAGTTGGACTATAAAGAAAGCTGAGCACTGAAGAATTGATGCTTTTGAATGGTGTTGGAGAAGACTCTTGAGAGCCCCTTGGATTGCAAGGAGATCCAACCAGCCCATCCTAAAGGAGATCAGTCCTGGGTCTTCATTGAAAGGACTGATGTTGAAGCTCAAAGTCCAATACTTTGGCCACCTGATACAAAGAGCTGACTCATTTGAAAAGACTCTGATGCTGGGAAAGATGGAGGGCAGGAGGAGAAGGGGTCAACAGAGGATGAGACGGTTGGATGGCATCACTGACTCAATGGACATGGATTTGGGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGTGGTTCATGGGGTTGCAAAGAGTTGGACACGACTGAGCGAATGAACTGACTGACTGACTGGTTCTTAGGATTACTTTATAAAAGTGCAAAATTTTAAAACAATTAAATTTAAAAGCAAATTTTAAAAGTGAGAGTGTTAGTCGCTCAGTCATGTCTGACTCTTTGCAACTCCATGGACTGTAGCCTGCTAGGTTCCTCTGTCCATGGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTCCCTTCTCCAGGGGATCTTTCTGACCCACGGATCAAACTTGGAACTCCCACATTGCTGTGCTGTGCTTAAATGTTCAGTCATGTCTGACTCTTTACAACTCCATGGACTGTAGCCTGCTAGGTTCCTCTGTCCATGGGGATTCTCCAGGCAAGAATATTGGAGTGAGTTGCCATGCCCTCCTCCAAGGAATCTTCCCAACCCAGGGATTGCACCCAGGTCTCCTACATTGCAAGCAGATTCTTTACTGTTTGAGCCACCAGGGAAGTCCCAAGAATATTGGAGTAGGTAGCCATTCCATCCTAAAATATTTTAAAAAATGGGAAAAGTAGCATTTTAACCTATTTCACTGCCATTGTGATAATTTGGTATATTGCCTATTTACATTTGTGATCCTTACTGTAAAGACTGCAGATTTGTAATGGTGTTTTTCTTTTCTCCGACTTACTTTTTATTCAGAAAATATTTCTCATGTTGCTCCAAGGCCACCATTTTAAGGATGCCTTCAGAATATTCTATTGAGTTGATGTGTCCTAATTTACTTGCTTTGTTATTGTTGGATAGTTAGATGATTTCTAGTTTTGCTGTTTTACCAAGAGTACAATGAATATATTTATATGTTTCATGCTTTTTATTCCCCTTTAGGAGTATTTCCTCCTCCAAAAAAAAATGTGTCTTCATTTAATAGCTGCTAATATTTGTAGCCAAATTGCTTTTGAAACTGATGATATCAACTTAAAATGCCATAAGCAATGTAGTAGTAACAATTTCACTGTCTTCCAACAAACACTGCTTTATTATAATTACTGTAAATTATAATAAAATTTTTCCTAGAATAAGGTACAGAGTAGAGCAATGCATTTATTATAATAAAATACAACAATAAATGTATCACAAGTAATTATAAATTATTAATTTTACCTTAAGTGGCAAAATCATAGAGCCTAATTTTAATTTTCATTTTGATTACCAAAGTGAATGATTACCAATATAAAAGAATGCTTTCTCTTGAATTCATTTACTTTTTATAATTCATTTTTTCCTTCAAGAATTTTTTTATGGAGCTTCTGTGTGAAACACTGCTTGGGAATAAAACAGTGAACAAAACAAGTGAAATCTCTGCCATCGTAATGCTCGCTTTCAAGTGGAGGATATAGAAAAACAAGCAAACAAAAAGAGCCAGTGAGCAAACAACATGCCAAGTTCAGTGGAGAAAAGTTAAGAGGATAGTGGAGAAAAGGAGTACCTGAAAGGGAGTAGTGGTTTTATGTCGATGGTCAGGGATGACCTCTGGAATTACATCTGAGCACAGGAAGTGAGGGAGAAAGCCATGTGACTATGCCTGGGGAAAAGCTTTCCAGGCAGCGGGAATGGGAAGTGCAAAGGTCCTGATGCTTATTCTTATGGTAGAAAGGCACTGAGTTGAAGTCCGTTGATTATGTTCATATGCTGGGGTGGGGGAGATCAAGAAGAGAAGGAAAAAGGGAATGGTTGGTAAGTGTAGTCCCGGGGAAGCAGGCGAGTGTGGCTTAGAACTTTAGATTTTTTTTTTTTTTAAAGCAGCTACTTGTGTTGTTTAATTTTTAAAATTTTATTTAATTTACTTATTATTTATTTTTGACTGCTCTGGGTCTTCATGTGGTGCATGGACGTCTCATTGCAGTGGCTTTTCTTGTTGCCTCACATGGGCTCTAGGTGCCCGGGCTTCAGTAGTAGTGGCACATGGGCTTAGTTGCTCTGTGCCAAGTGGGGTCTTCCTGGACCAGGGATCGAACCTGTGTCCCCTGCATTGGCAAGTAGATTCTTGACCACTCAACCACCAGGAAAGTCCCTCGTATTCTTAACTAGAAGGATAAGCATTATATTCCTGAAAAAGGAGGAAAGAGAGTTGACGATGGATGCTGGTTAGTCTTCTGGATGAGGGCATGGGGTCAGGGCCAGGTCATGGGGAGGATGGTGCAAGGATTTGAGGGGACAAGGATTTGGGAACACAGTTGTCTGGGGCCTGGCAGGGAATGTGGCTGGAGTCACATAGAGTGATTCCTGGGTAGCATTAGGAGCTGGACTGAGTTTGGAGGCCATGAATTCCTAGCGCCAAGCCCCTGCCTTGCCATGACCTGTGTGTGCAAGTAGAGACTGTACATTATCTGATCATTTGGGTTGGACTTCTCCTGCTTAGGGCCCTGGAAGGCTGAGGGGTTGATGGAGTAAAGGCTGTTGGCAAAAGAATGATTGATGTGAGACACCATCCTTAGGGGAGGGTGTGCAGATTCAGAGGGTTTATTAAGGGTGAATGTCGTGGCTGATGAGGAGGTAAATGAACCCTGAGGCTAATGGAGTGGAGGGTCCATGAGGACATTAGAGTGTCTCAAGGTGAACCATGGTGGGTTGAAGCTGGAGACCATGACCCACTCACAGTCTGTTGCTTCATGGGTTTGTTTTTTCAACTAGGTGGTAAATCACTGACTATATCATCTCCTTGTCTGTCTATTTGTCTTGATTAAAGTGCCCCAGTATATTCATTTGTATTTATTACACTCTTGAGAAATGTATAATCTAGTTGGAGGGGAGGGGAATACTTAAAGTTAGTTAGGGGTTGATGATGGATTGTTGGCAAAGGTGAAGAGGGAAGGGAGCCTGACTAGAGCAGATTTATATGAAATAGAAGCTTCGTGGGAGGAGAGGCTCTTCATGGCTTTTGGACTTATTTCCTCCACTGCTGGAGAAATTAGAGTGATTGTGGTCCATCTATTCACCAGTTGGTTCTCTCATCTTTAACACAGCCCTTTACAGGATGCCTGGCCTGGGTTAGCGTGAGAAGTATGGCCATTGTTGGAGGCCAAAATCTCATCTGGAGGCTGGACCTGTCGCGTTGCTACCAATACTGATGTGCTATCAATAGCTACATAAACAAATATGACATGATGCTATTTTTTTTTGATAG
Seq C2 exon
GACCTTTGTGTAAATGGTGCTCAGATACTACACTTTAAAAGCTCTTTAGTGGAGGAAGCAGTTAATGAGCTAATTAATATGTTGCTGGATGTGGAAGTTCCATCTAAGGAAGAAAGAGAGAAAGTATTCAATGTGAATAGTGATGATTGGAAAAATGAAAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]