GgaINT0093155 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78528239-78530586:+
Coord C1 exon
chr2:78528239-78528363
Coord A exon
chr2:78528364-78530450
Coord C2 exon
chr2:78530451-78530586
Length
2087 bp
Sequences
Splice sites
5' ss Seq
AAGGTTATT
5' ss Score
4.15
3' ss Seq
TGTTTTGATTTGATAAATAGGAG
3' ss Score
4.84
Exon sequences
Seq C1 exon
ATAGAGTGAATGACTTGATTGAATTTCGTATTGATGCTGTCCTTCAAGAAATGAGTAGTGTGCCGCTCTGTATATTGCCAGAAGATGAACCATTGAGCTGTGAGGAATTTCTCCAAAAGACTAAG
Seq A exon
GTTATTATATAAGATTTTCATAAAGAAGTATTTAATATTTCAAATTAACATATTTTCCTTTTTAAAATGAGATATAATTATTGCAGAATTGGTGGGAAAATGGAGAAAGGACATCTCCAGTTGTTTTCTTCAGTGGAACATTAAATAGGAACAAAATTACAAAATGCAGTGATGTCTGAGCGGCATTCTTTCCTCAGTTTATTAATGTCAAGTCAACTTCTGCATGATATTTCTTTTATGCTTTGATACCACTCAAGTGTTTTTCCTCTGTGATAATATTTTTTTTTGGTCATTGTTGCTTGTTAGTGCCTTTACATAACAGAATTGCCTGTCTCATGCTAGAGAATAGCTCCATAATAAGTGCACTTGGTTTCCTGGGAGAGTAAATACTATGGAAATGATTGTGTACTGAATATCTTTCAAAATCTCAAGCTGTCTTGAGTTTGTATATGCAAAATATGCTCAGAAGTACCAGGGTGAAATTAATCTGGGAAAAGTCACTTCATTTACCCCATCAAAATACTTGTATCCTGAGGAGGATTAACCGTAAGCCTGTAAGTAGCTAGTTGTTAAAGCTGATTAAACTAGTAATAAAATTGAACATCAGAATTATTTTTACCAGACAGTAGTTAGTTGTTCTGGCGTTTCAGAATATAGTATCAAGCTTGTGTTTTCTCCTAAAGTAAACTTTGCTTTTGGAAAGAATATAGAAGATCACATAGATAAATCCCTATGCCTAGTCTCATGTAGTAATAAACACTGCAAACAAATTTTGTTTCTCTAAGTTTGCATATAACTCAGTTTGCAGTATAACTCTGCTAGTTGTTAATCACAATGTGAAACTTAGAATATTTTTAAAGAATTAATGGTATTTTGTACACCTTTTTCATTGATTCTGCTGCTGTTTCTTGACTAAAGGGCTACGACTAAAATATGCAATCACTGAAGTAAAAATATGTGGGAGTTAGCACAAAAGAAAGCTTGAACTTCTCTATAGCAATTACAGCACCACAACAGTTCAATACTTTGAGTTAACAGAGGAAGTGGTGTAGTAACTGCAATGAAGATAAGAACAAAATTTGTAAACTTATTTCAGTTTCTTACTAGGAAGGACTAAAAATAAGGTCTATCCAGTGTCAGGTGTCTTTAAGTTTACAAAGAAACTACTGCAAAAATAATAACTATAATAACTAATGTGGAGGGAAATGATTTGTTCAAATCATTACTCTGATACTACAAAGCAGAAATGGCTTCTTTCTCAACTAGAATAAATCATTAGAAAGATCAAAGATTGTGTCTTAAAATTTGGAAATGATTGAGTCTTGCTAGTATCTGAATTTTCCATTTATTAATTTTAATTAAGCAGAGATAGCCAGGTTTGACTAAGCTTAAACAAATAAATGGTAAAAAAGAAGAAAAAAGACAACTGTACTTAAGACATTGTACATGGCTGAAAATTGCTTCATCAATTTTACCTTAAGTATTAAAGAAAGAAAACTGGCATAATACTTCAAAATATTTCTGAATTTTGTTAAATCTCATTTTTTTCCTTCACACAGTTAATAATTTTTGTGTTTATTCCAATCAAAAATACAACTTTGGATGGATTTTATCTCCTATTTGAATATAAAAAGAAAATACAATTGGCTAATACTCCCTATGGCACAGCCAAGTAATGTAAAATAGAAATGATCGAATGAAAGGTTAATGTCTCCCCTGTCTACCTTGGAAAAATAAAAAAAAAATAAGAAGTACTTGCTTTTGAGAGCCCTTTAACACAGTTTTGTATTGTAAACATTAATTCATAATATTAAGTCTGGATTAGTTGTGTGATTTAGGAAACAAGTCACAGCAATTTTGAAATACATTTATGATGTCTTACTTGGCACAACAAATAATTGAAAACTAAATAGAAATAGGGAATAAAAGTCAGAACAAACAGATTTAAAAATAACGTTGTGCATTGATTGTGTTCTTCACAAATGTGAAGCCTTGAAATTTGTGCTAATAAAGGATGCTATGATTGTGAAGTAGAAATAAAAACTAGGAACCATAAGAACATATGTTTGTTTTGATTTGATAAATAG
Seq C2 exon
GAGCTCTGTATGAAAGGTTCCCAGACTTTACATTTTAAAAGCTCACTGGTGGAAGAAGCAGCTAATGAGCTGATTAACATGTTACTAGACACAGAAGTACAGGTCAAAAAAGATGAGAAGCCAGTTGTTCCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.174
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]