RnoINT0048952 @ rn6
Intron Retention
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:81002118-81006878:+
Coord C1 exon
chr2:81002118-81002263
Coord A exon
chr2:81002264-81006715
Coord C2 exon
chr2:81006716-81006878
Length
4452 bp
Sequences
Splice sites
5' ss Seq
AAGGTCATT
5' ss Score
4.32
3' ss Seq
TCTGTTCTTGTTGCTGTTAGGAC
3' ss Score
7.68
Exon sequences
Seq C1 exon
AGGACCTGGAGCTGCTGCTTGACCGGATCAATGACTTGATTGAGTTCCGCATCCATGCCATCTTGGAGGAAATGAGCAGCGTGGCCCTTTGTCAGCTCCCTCAGGATGACCCCCTGACTTGTGAAGAATTCCTCCAAATGACAAAG
Seq A exon
GTCATTAGAAGACTGATTAAAAAATACTTTCTTGAATTAAGGTTTTTAAATACAGAATGAATATTTAAAGCATAAATTAGGAATTAGAAGAAATTCTCTTCTGCTCCGTGATAGAAGTAACTCAAATGTAGAACCATCTGACAACATGAAGAAAAAGAAAATGTTATCTAAGCAGCCACTTACAATTTGCTTCTTTTCACATCTGCTGGAGGGAGCATTGCTGTGTGGCACATGTTTCTAAATTTTCCACATATTTTTTTAAATGAAGGGCAGAGGTGATTTTTTTAGAAGAGCATCAGTAAGCAAGGGTTAATTATGAAGTAGCTGTGGGCAAGCTGTCTTATCAGGCACCCCAAGGAGCCGTTTCAATACTCTATATTGTAGCATAGAGTCCTGTACTCCCTCCTGGGAAAGCCGGAAACTCTCAGAGGCTCGTGTGGAAACTACTCGGGGCAGAGACTGTGTTTACAGGTTTATCAGGCATCAATATATGAAAATGCTCCCCCTCCCCCAGGTCTCCATTATTTCCCAAAATTCTTGCAAACAGGGTGCTTTTCTTTCTACATTAGGATCAAGCTACTGTCAGAGAGGGGCTATACCTTTCGGGAATGACACATTAGCCTTGTTTACAACATTTCCTGTGGGTGTTCTGGTGATAGGAACTCTTCAAGGATGGCTTTCATATTGTTGGTCAGTAGTGCTTACTGACCATGACCCATGACATTCCTGTCAGCTTGTGGCTACCCTAGAGATGGGACTTATCATCAAGGCAGAGTGACAGCCACAGCTAGATAATGCAGCAGGCAGGTAGAGTCTGGGGGAAGCCTGGCACAACCTTTCTCTTTCTAGTGAGGATTCATGGAGAAGTCTTTTCACTCAGCTGTCAACAATGGAACAGTGAAACTAATTCATGGGCAAACGTTTTGTCCAGGGAAGTTCAGTGCTTGACTGCTTGGTATTTGAGGTTCTTTTTGTAAAATTTAAATTTTATTTTATATCATCTGTGTGTGTTTGTGTGTACGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTACACACAAAGGCCAGAAGAGGGCATCGGGTTTCTGGAGCTGAACTCATGTCCTCTCTTGGCCTGAACTCTGGACTCTGGAAGATCAACAAGCTTTCTTACCTATGGAGCCACTCCCTCCGTCCCCAGTGCTGTGAGTTTTTAATGACTTCAGTCACCATGACTTACTCTGCTTTACATGAAAAGACCCAGAGTCTTGGAATCTCAGTATTTTTGGTATAGACTATGTTCTTTACAGAAGTATTCTAGCCACAGAACCCATGTTTCTCAGCCACTTAGCCGTGAGGACCCACCTGAATCGGATCTCCTTGGAAGAGGAGGGTTTCATGCTCACCGGCAACTCTTTAAGCGAACCAGGCGTTTGGTGTTAAAACCTATTTGCAAATTTGGTAAACTTCAGTCTACTTTAGGGTTGCCCACATTTTAGAATTCTGTTTGCCCTTCTCACAATGATTTTTAATATTTTTCCAGCTGATTTTTATGTTCCCTCCTCATCATAAGTTCTGTGGTTTACATCGAATTTTAGATATTAAAAACAGAGATATTAGCATTTACACCAATCATATCACCATTGTTTTTATGGTTTTATGTTTTCCACAAGTCTTGCTGTACTCACTGCAGGCTTGCATACAGCTTTTATGCTTTGCCTCTTAGCTTGTATTTCTTTGCTATATATATATATTTTTTTCATGTCACTCAATGGCTTTCACAGGCAGCACGTAAATGATACCTTCATAATATTTTATTGAGATGATATATATTGCTTCTTACTATTGGACATTAAATGGCTTCCAAAATCGACAATTTTGCCAAGAGCTACAATAAATATACTTGTATAATTTTTTTTGGTCTTCAGGACCATTGCTTCCAAATGGGATTATTGTGTCATATTGTTTAGTTTCATTTCACAGCTCTTTATGGTTATAGACAAATTGTTTTCTCAAAGAATGATCCCAATGTCTAATACCATAATACAGTAATACCAATTTCACTACCCTTTGACAAATACTGTTCTCCTACAATTTATTAATTTGAGTTTGAATAGCAAAATCATATATCTAAATTAATCTATATATTTTGATTACCAGTGTAAGTAAGTGCTTTCGGTTGACTTATTTCTACGAACTGTTTGTTTTGTATTTTAAAACTGTTTTCATTTATGCATATATTGTTTTAAAATTTTTAATTCTTTTATTTTTGAGGATAAAATATAATTACATAATTTCCCCATTCCTTTTCTCACTTCAAATACCTCCAGAATTTCCTTCTTGCTCTATTTAAAGTTCATGGCTCCCTTTTCATTAGTTGTTATACACATATACATGTGTATATTTCTATATATATTTCTAACTACATAAATATAGCCTGCTCAGTATGTATAATGTTACTTACACATATGTTTTAGGGCTGACCATTTGGTTTTGAGTAACCAGCTGGTGTGCTCTTCCTAGGAAAGACTATTTCTGCTCTCTTCAGTGTTTAGCTGCTATAACTCTTTGTGTTGAGTTGGAACCTCTTGGGTTTTTTCTTTCATGAGAGCTGCTTAATAAAGAAGGGGATGTTGGGGACTCAAAGCCAGAGCCTTTGGACACTTTTTATGCCTGTTGTCAATGTGGAAATGAGTCACTGAGATTGGCAGGTGCTGTAGGGAGCATCTTTGGTTTAGTTTGATGTAGGAACATTTAGATGATGCCATCATGACATGGTCCTCATTCATTCTTTAAATTTGTATCTTGTTTGCACTTTTATAATTATGTCTTCTCTTAGAAAGAGTTGAGGGTCTTGAATAATCTTGGATTAATAGTATTAATCATTGAGAGTTGCTTCCCCTGGTCCCTCTTCAAGTCATTTTTAAAACACACTGAGTCCAGTAAACCTCTCCCATAGGTACATGTCTGTGGGATAATCCACTAGGACACAGGCAACCTGCCAGTGGGCGTTCCTCAAGGAAAACCAACTCTCTTTCCCCCATCAACTATCAATTCTCCTCAGCTAGGATAGAGCCCGAGGAGCTTCTCTTTCTCCTTGCTGAATGTTTTAACTGGCTTGGTCTTATGTAGGTATCTACAGTTGTGAGTTTTTGTGTGTAATAATCATATCATGTATAGATATAGGCCAGCATCTCACAGTACAACTCCTTGTTTTCTGGCTTCAAACACAAAACAAGACTGGGTAAAGATTTGTAGTTACGTGAAGTTAAGTGAAGATATATATCAAACTAAGTTTAAAAGTTTGGTCCAGGAAATACTAGAATAACCAAGTTTAAAAGTTTGTTCCACACATTAATAGCATCAAGATGTCACATCTCCTGCAGAAGAGGGGTGGGTAGAAATCAAGAGTGATGAGTGAGGAGGTATCAGAACCGTGAACTATTGGATGTGGACAGTCCATGAACATGTTAACGTCTCAATGTATAAATCAATGAAAATTGAAATGGACTTGGAAACTGTGACTGACAAAGTCTCCATTCACTGAGCTTTCCCTCAGTAGGCGTAAAAAAGACACTTCTGTGTGGTTTACCTATCTTTATCTGTCAGTCACAGAATCTACCACAGAGCTTCATATTGCGTTACATTTGTCTTGCTTCATTCCTGAGAAAGGTACAACCTAGCTGAAGTGAGAGTAGATCTGAAACGGTAGGAAGGGTAAATTCACATCATAGGAAGGGCAAATTCACATCATGTGAAGGGCAGATTCACATCATGTGAAGGGCAGACTCACATCATATGAAGGGAATTCCATGGGATGGGAAAGCTGCTGATGGCTTTGGAAGTTGCATCTTCTATGCTGGGGAAAAAGCACCAAAAAACCAAACCTAAAACCAAACAGCAGTACCCTGCAGCTTTGCTCTGTTCACTTGGATCCAGTTGGTTTTCTTGTCTTTCATGCTTTCCTTTTGGGATGCCTGGCTGGGGTGAATATGAGTATGTTGCTGTGTTAGTTACTTTCTTGGTTTCTGTAGGTAAAATATCATTACAGAAGCAACTTAAGGGCAAAGGGCTCATTGTGGGTTACAGTTCTGGGTTACAGTGTTTCCCGGCAGGGGAGTCAGAGTATCAGGCATTTGAGACAGCTGTCTATGCTGCTTTTCCAGTGGAGAAGTGAAAAGGATGCTTATGTTCAGCTCACATTCTTCACTTTTATATAGTTTAGGGTTCAAGCCCAGGGAGTGGAACTACCCACTCTAGACAGATTTCTCTATCTCATATAATTCTAATTCCCAAACTGATGACTGAGATTAACCGCCACAGTCAAGTCATCGCTTAAGCTAAGGTATCAATTGAAGGCTAAATCTGTGTGTTCTGATCTTCCTGATGAACTTTCAAGAGCTAGATAAAGACATGTGACTGTCGTCTTCTGTTCTTGTTGCTGTTAG
Seq C2 exon
GACCTTTGTGTGAATGGCGCTCAGAAACTCCATTTTAAAAGCTCCCTAGTGGAGGAAGCAGTAAATGAGCTAATAAACATGTTATTGGATGTGGACGTCCTACCTGAAGAAGCATCTGAAAAAGTCCGCCATGAGAATGCCAGTCCCAACGGGGACACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363:ENSRNOT00000074689:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.309
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]