HsaINT1011492 @ hg38
Intron Retention
Gene
ENSG00000039139 | DNAH5
Description
dynein axonemal heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr5:13885964-13891121:-
Coord C1 exon
chr5:13890976-13891121
Coord A exon
chr5:13886130-13890975
Coord C2 exon
chr5:13885964-13886129
Length
4846 bp
Sequences
Splice sites
5' ss Seq
AAGGTCATT
5' ss Score
4.32
3' ss Seq
TTTTTTTTTTTTTTGGTTAGGAT
3' ss Score
8.57
Exon sequences
Seq C1 exon
AGGACCTGGAGTTGCTGCTTGACAGGGTCAATGATTTGATTGAGTTCCGCATTGATGCCATTCTAGAAGAAATGAGCAGCACGCCTCTTTGTCAGCTTCCCCAGGAGGAGCCACTAACCTGTGAAGAGTTTCTCCAAATGACAAAG
Seq A exon
GTCATTAAAACCTTGATTTTTTTTGTTTAAGGTTTTTGGTGATTCATTTTCCTATAAAGGTCACTTTTTTGAAGTTATAAGTTAGATTTTTTTCTCTACTTGCAGTGCTCTGTGATAGAAGTGATTCAGACATGGAATCTTCTGACAATAATTTGCCAGTGAAGAGAAATGTATCTAAGTAAGCGGTCACTTAGCTATGGGGAACACATCATTTCAGATCAGTAGGAGAGAAATTGCCATAGAACACACTTGGAATTTTTCCATTTTTTAATGAAGGATAGAGCTATCTTGCAGAAGTGCTTCTCATAAGCTAGGGTTAATTAACGAAACAATTGTTTTGAACAGCTTCTAGACAAAATTTCTTCTTTAAACATTTTTGTTGAGGGGGGGTTTCCCAAACTGGTGTTCTATAGCACACAATTCTGGAGCCATTGCTGGGAATCCTGAGAGAGGCAGGGAGTGAGTGCAAACTGCTTAGGGTAAAGACTGTGCTTACAGATCCGCTACACTTTAACATGTTAAGATAAAGGCCCTCAGAAGATCTCCATTTAACCTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGATGCGATCTCAGCTCACTACAACCTCTGACTCCCCGGTTGAAGCAATTCTCCTGCCTCAGCTTCCCGAGTAGCTGGGACTACAGGCACACGCTGCCACGCCTGCCTAATTTTTTGTATTTTAGTAGAGATGGGGTTTCATCGTGTTGCCCAGGCTGGTCTCTAACTCCTGAGCTCAGGCAACCTGCCTGCCTCGGCCTCCCAAAGTACTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCCTTCATTTAACTTTTCGTAGCTCATTATTTCTCCAACACATTTGCAAATGGGATACTTTCTTCCCTGTGCCAGGAGTAAGCTCCTGGGAGCAGTGCTCCATGAAGTGCCCCTTCAGGCATGTCACGTTAGCATCATTTACAATATTCCCAGTGGGCATCTTGAGGATAAGGACTCCTTGATCATGATTTTAATATGATGTGCCGGGGTCTCCAAGACCACCCCCACTAGGAGGACTCACGGAACTCAGCACGTAGTTGCACTGCCCTGACATAGTTAAGAGATGCAGCCGGATCATAAGGAACAAAGACAGGTGGTGTCTGGGGAGTCCCTGTCCAGGCTTTTTCATGCTGTCTCCCTCCTGTGAGGCTTGCCCGGAGCTCACCGTCCCCTCTGTGCAATGTTTCTGCCCAGGGAAACCTATTAGAGACTCAGGGCCCAAGGTTCTTACTGGGTCTGGTCACACACTCTGCTTAGCATGGACCAGAATTCCAGACTCCCAGAAGGAATCAGGTGTTCAGCATAAACTACATTGTTTGCACAAGCAGTTTAGGCACAGCAAACTATCTTTATCAGCAGGGCAACAGGGGGAACCCTCCTAAAATCCAAGCTTCCAGACGCCGGCCAAGGGACCACCTCCCAAGCAGGACTTTCTAAGGAGAGCAGTTTCAGGCCTGCTGTGTTCACCCCTTTCTGCATATATGGCAGGTTATATTAAGTCATTTTATACGCAAAACTTACTGTCTACATGTTAGAAATTTCTAGTCCCTCCTCCTCACATTCACTAACTGTGGGTACACCTAACCATCCCCTTGTTCTTCCTCATCATTTAAAAAACTATCTCTTCCTCTGAAAAATCACTTGCCTCCATGGTTTTAGTCTTACCCCTTTTCTGATGATTGTTTTATAAAAATACACTTGTTTTAAATTTAAATTTAAAAGAAAGTTTTAGAATATTTTAAAAATGGAAAGAAACTAGCCTTTTAATCAATTATACCATCATTATTATAATATTAATGCATTTTAAGCTTTTTAATAAAGTGGCGATCTCTACTCCATATATATCAGGTTTTGAATAGTACTTTTTTCTCCCAGTTAACATTTCGTCACAAAATATTCTTCATGTTGCTACATGGCTTTCATAGGCAGCCTTTTAATGGTGCCTTCAGAATATTCTGTTGAGTTGATATACTGTAATTTACTTACCAGTTTCTTATTGCTGAACCTTTAGATGGCTTCCAAAGTTTTGCTAATTTGTCAAGAGCTGCAGTGAATATATGCATGTATCATGTATTTTCTCCTTTAATGTTATTCCCTCCCCAAAATAAAATTATTGTGTCAGAGAGTATGGCCTTATTGGATGGCTGTTGATATTGGTAGCCAAATTGCTTTTCAAAAGGATATTATCAGCTTACAATGCCACCAGCAATGCAGTACTACCAATTTCACTTCCAACAAACACTGTTTTATTATAGTTTACTACTTTTACTTTAAGTAGCAAAATCGTGGAACCCAATTTGAGTTTGCATTTTTGATTACCAATATAGGTATTAGTAAATCATTTCTCTTGAGTTTGTTTATTTGAATTCATAATTCAATTATGGAGAAAAATGAAAAGGATGATGGAGAAAAGGAGTACCTGACAGAAAGTTGTGATTTTATGTTCATGGTCACTGATGACTTCTACGGTTAGATTTGAAGGGAGGGAGTGAGAGTGCAAGCTATGTGAACATTTTAGTGGAAGAACATGCCAGGCAGAGAGAATAGCATGTGCAAAGGCCCTGAGGTGGAAGCATGTTGTAGCTGGAGAAAGGTGTTGAGTTGAAGTACATTGGGTGTTCATATGCTCAGGTGGAAAATTAGTAGAGAGGAAGAAAGGGGTAGGCTTGGTTTCTGAGGAAGCCAGAGAAGCTGTGATTCAGAACTCAGGTTGTGGAGTTAACCTCGAATAAAAGGAGAATGATTGCATTCACCAAAACAAGAGGAAAAGGGGCTCATGATGGAGGCCGATTTGTCTTCTGCATGAGGGCAGTGGGAGTTGTTTGAGTCCCCGTGTCATGACCTCCATTTGCTTTGTGCTGTAGAAATCAAGGTCATTCTTTGAGTATGACGAGGAAGGATGGTGTAACGATTTGAGGACACAGGGATTTGAAGACACAGCTATTATGGAGCTTGGTAGAGGGAGGTGGCTATAGTCATGTAGAATGATTCCCGAGTAGCATTAGGGGCCAGTTTGAGTTTGGGGACCATGAATTCCCAGTGCCAAGCATCTGCCTCACCATGACCTATGTGTGCCGGTGGAGAGGGTAGGTCACCTGGTTCATTTGGGTTGGGCGTCTCCTGGGTGGGGCAGTGGAAGGTTGAGAGAGTGATGGAGTAAAGGATATTAGCAAAACAATGGTTGAAGTGTGAAATCGTGTTAGGAGAGGGCATGAACCAGGGAGTAAGGGTGAAGAGACCTTGAGAAGACATGGCGTCTAGTAGGTTCCTGGTTTGCCAAAGCTAAAGCATCATGGGAATGAGGAAATGGTGGAGCCCCATGCTGATTATTCAAGGAGGACACCACTCAGGATTGAAAGAAAGGCCCTTTTGGTGGGTTTCAGCTTTTGGGTGTCATCATGGAGGTTAGTTGTTGAAATGAAGCAGGATAAGTGGAGGCAGCATCTTTCATTTATTTTATTTGTCCTGGGGGATATTTTAATGAGTCTATTTATTACTTCTTTTTCCTCATTGCGTTTATATTCTGCTTTGTTAATTTCTATGCTATTTACATTTTTATGGTTATGCCTTCTCACAGAGAGAAAGAGTTAAGAGATGTAAACAACGTTGTTGGAACTATATTAGTCTTTGAGAGGTTATCAATCTCATCTTCTAGAACCCTCAATACAAAGGAATTTTATGATCTCAAACATGTGCTTGTGTTACTGAGAGGACTGAAAGAGCTGCAAGTTAATTGAGGATTCCCTGTGAGAGCTGGCCCTGAAAATGGAGACCACATGTGTGTTTCTCTCCAAGGTAGAGTCAGAGGACTTAAGATTCAGACTTTAAAAAATATTAGTGTTCTCTCAGAGAATTGAGGAGTTAGTTTACATGGAATGAGTTGACTAACCTTTGCAAATATTTAGGTCCTGTGGATGTTTGTGATTTTCCAACCAATAATAATAACAAGCACTTCTTGTGTGCTTACTTTATGCCAGGCACTGCTCTTAGTATTTTACTTGCATTTATTTTATGGAATACTTGCAAAAACTACAGTGAGTTCTACTATATCACCATTATACATATGAGGGAATTGAGACTGAAAAGAATTTTCAGGATCATGCAGAGCAAGGATTTGAATCCTAGTTTTCAAGCCGTATAAGTTTAAAGATGTATAATGCTGGAACTTGGAATGGAGCTGGACACTGTGCCTAACTGACAGTCTGTTGTTTCATGGGCTTACTTTCCAACCAGGTGGTAAATCACTGATTCTGTCTATATCATCCATCTATAACTATCTGTCTACCTAATCTCCTCCAGAATTGATCACCATGCCTCAAATCATGTTAGTTTATATTTATTAAATCCATTCTTGAGAAATGCACAATATAGTTAGAAGGGTGGGTAGTGTCTTTGAAATTAATGAGGGGATGACTATGGTTTGTTGGCAAAAACAAGGAGAGAAAGAAGGGTGGCTGGATCCGATTTATGTGATATGAAGGAAATGTGACGAGTAGAGAGGCTGCTGATGGCTTTTGAAGATATTTTCTCTACTGGTGGAGAAGTGCCTGTAATTTTGGTCCATCTACACTGATCCAGTGGGTTCTCTTGTCCTAAACACATTCCTTTAGAGGACACCTGGCCTGTGCTATTGTGAAGGATGTGGCCAAGCATCACTGGGGCTGAAATCTCACCTGGAGGCTGAGCCACAGCATTGCTACCACTGTTTCTGTGCTCTCAAAAGCTAGATAAACCATATACCACTGTGCTATCTTTTTTTTTTTTTTTTTTTGGTTAG
Seq C2 exon
GATCTTTGTGTAAATGGTGCACAAATACTACATTTTAAAAGCTCATTAGTGGAGGAGGCAGTCAATGAGCTTGTAAATATGTTGCTGGATGTGGAAGTTTTATCTGAAGAAGAAAGTGAAAAAATATCCAATGAGAATAGTGTTAATTACAAAAATGAAAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139:ENST00000265104:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.268
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains