MmuINT0050899 @ mm9
Intron Retention
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28193307-28199210:+
Coord C1 exon
chr15:28193307-28193452
Coord A exon
chr15:28193453-28199047
Coord C2 exon
chr15:28199048-28199210
Length
5595 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
3' ss Seq
TTTGTTCTTCTTGCCCTTAGGAT
3' ss Score
11.9
Exon sequences
Seq C1 exon
AGGACCTGGAGCTGCTGCTTGACCGGGTCAATGACTTGATTGAGTTCCGCATCCACGCCATCCTGGAGGAAATGAGTAGCATGGCTCTTTGTCAGCTCCCTCAGGATGACCCCCTGACTTGTGAAGAATTCCTCCAAATGACAAAG
Seq A exon
GTTAGCAGAAGACTGACTTAAAAAAAGAAAAAAAAAACTTTCTGGGATTAAGGTTTTAAAATATAAAAGGAATATTTGAAGCACAAATTAGGAATGAAAAAAAGATATCTTCCGCTCCATTATAGATGTGATTCAAATGTAGAGCCATCCGACAAAAGGAAGATAAGGAAAATGCTATCGCACAGCTACTGATAATTTACCTCCTTTCAGATCAGCTAGAGGGGGTGTTGCTGTGATATATGTGTCTAATTTTTCTACATTTTATGGAAGGCAGAGTTATTTTTCTTTTTCTGAAGAGCTTCAGTAAGCAAGGGTTAATTATGAAGTAGCTGGGCGCAGCTTCTGGGCAAGCTGTCTTCCTCAAGCACCTCCCTAGAGCTGTTTCAATACCAGTATTGTGTAGCATAGAGTTTCTGGACTCCTTCCCAGGAACACTGGGAAATATCAGAGGCTGTGTTTAAACTACTCAGAGCAGAGACGGTATTTACAGGTTTATCATACATCAATGTATGAAAAGAATCTCCTCAGAAGGTCTCCATAATTTCCCAAACATCCTTGCAAATGGAGTGCGTTCTTCTTACATGAGGACCTAGCTACTGTCAGAGAGGCTCTATACTTTTTGGGAATGACACATTGGCCTTATTTACAACATTCCCTGTGGGTATTCTGGTGATAGACACTCTTCAATAGTGTCTTTATTATTGTTGGTCAGTAGTGCTTACTGGAGGACCCATGACATCCCTGTCAGCTTGAGGCTGCACTAGAGATGGGACTTATCACCGAGACAGAGTGAAAGCCACAGTTAGATAATGCAGGAGGCAGGTAGAGTCTGGGGGAAGCCTGGCACAATCTTTCTCTCTCTAGTGGGGATTCATGGGAAACTCTTTTCACTCACCTGTCTGTCAACAATTAAACTACAGCAATTCAAGAGCAAGCCTTTTGCCCAGGGAAGTTCAATGCTTGACTGCTTGACCCTCAAAGTTCTTTTTTAAAAAAATTTAAATCTTATTTTATTTCATCTGCATGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGAGGGCATACACAGAGGGCATCAGGTTTCTGTCCTCTCTTGGCCTGAACTCTGAACTCTGGAAGATCAACAAGCCTTCTTATCCACTGAGCCATTCCCTCCATCCCCAATGCTATGAGTTTTTATTGGCTTCTGTCACCATGACACACTCTGCTTTACACGAAAAGTCTCAGAGTCTTAGAAGGAATGGAGTATTTTTGGTATAAACCATGCTCTTTACAGAAGTATTCTAGCCACAGAATCCATGTTTCTCAGCCAGTCAGCAGTGAGAACCCACCTGAGTCTGATCTCATTGGAAGAGGAGGGTTTCATACTCACAGGCAAGCCTTTAAGAGGACCAGGCATTTGGTGTTAAAAACCTTTGTGCTTTATTTGATAAACTTCAATCTACATTAGGGTTGCCCACATTTTAGAATTCTGTTTGCCCGTCTCACAATGGTTTAAAAATTTTTTTTTCTGCTGGTTTTTAAGTTCCCTCCTCATCATAAGAGAAAGCATTCAGTTCTGTGGTTTATGTCAAGTTTTATGTTTTAAAAATAGAGAAATTAGCGTTTATACCAATTGTATCACCATTGGTTTTTATGATTTTCATGACTCTCATTGTACTCCCTGCAGGCTTGCATACTGCTTTTATGCTTTGCCTCTTAGCTAGTATTTCTTTGCAATCTATCTATCATCTATCTATATTTTTTCATGTCACTATATGACTTTCATGGGCACACGTAAGTGATACCTTCATAACATTTTATTGAGATGATATATCTTGCTTCTTACTACTGGACATTAAATGGCTTACAAAATTGTCAATTTTGCCAAAAGCTGTAATAAATATCTATGATAAATCTTTTTTTTTTTTTGGTCTTCAGGACCATTGCCTCTAAATAGGATTATTGTATCATATTGTTTAGTTTCATTTCACAGCTTTTTGTAGTTATAGACAAATTGCTTTTCAAAGGAAGATCCCAATGTATAATGCCATAATACAGTGATACCAATTTCACTACCCTCTGACAAATACTGTTTATTATATTTTATTAATTTCAGTTTGAATAGCAAAATCATAAATCTAAATTAATCTGTATTTTGACTACCAGTATAAGTGAGTGCTTTCAGTTGACTCATTTCTACAAATTGTTTGTTTTATATTTTTAATTTTCTTCATTTATGCATCTATTGTTTTAAAATTCTTAATTCTTTTGTTTTTGAGAATATAATATAATTACAACATTTGCTCATTCCTTTTCTCACTCCAAATACTTCTAGACATTCCTTCTTGCTCTTTCAAATTCATGGCTCCCCTTTCATTAATTATTACATACATATATGTATTCATTTATAGACACACACACACACACACACACACACACACACACACACACACACACACATAATCTAATGACATAAATATAGCCTGCTCAGTATGCATAGTGTCCATTATGTGTATAATTCAGGGCTGACTGGTTTTGAGTAACCAATCACTGTGCTCTTCCCTGGGGAAGAACTACAGCTGCTTGTAGTTCTTTGTGTTGAGTTGTCCTGCTCTCTTCCTTGCACAACTGCTTGTAGTCCTTTGGGTTGAGTTGGGGGCCTCTTGGGCTTTTCTCTTTCTGTGTGAACTGTATGGTAAAGAAGGGGATGTTGGGGACTCAAAGACAGAGCCTTTGGACACTTTTTTATGCCTGTTGTCACCATGTAGATGAGTCACTGAGAGTGGCAGGTGTTGGAGGGAGCATCTTTTTGGTGTTGTGTGACATAGGAACATTTGGATTAATCCATCATTATTCTGTCCCTGTCCTCATTCTGTTTGTTCTGTTTTATTAATTTGTATGTCGTTTGCACTTTTATAATTATGTCTTCTATTAGAAAGAGTTGATGGCTTTGGATAATCTTGGAGTGATAGTGTTAGTCACTGAGAGTTGTTTCCCAGAACACACAGTAGAAAGAAGTTCTGGGGTTGCAAATACATACTCCTGCTGCTGAGCAGATGTGAACAACTGTGAGGAAGTCAGCTGAAGATTTCTTTTGTGGGAGACCTGGTCTTGAGAATGGGAGATGATATGGTCCATTTTGAGCCTCTCCAACATAGAGTCAAATGCCTCAAAAATAATTTAAAAATATTAAAAATCTCTTAGAGGACAACTGATTTAGAATGAGGATTCCTGATTGAGTGTCATTTGATAGTTTTCTCTTTCTTTTGAGAAATTTTTTAATTGGTTATTTTATTTCTTTACATTTCAAATGTTATCCCCCTTCCTGGTTTCTCCTCTGCAAATCCCCTATCCCATTCCCCTTTCCCTTCCTTCTATGAGGGTGCTCCCTTCACTCCCACCTTCCTGACCTGGCATTCCCCTACACTGGGGCATCCATTGAGCCTTCACAGGACCCAGGGCCTCTCCTCCCATTGATGCCTGGCAAGGCCATCCTCTGCTACATATGCAGCTGGAGCCATGGATCCCTCCATTTGTACTCTTTGGTTGGTGGTTTAGTCCCTGGGAGGTCTGGGGGTGTGTGGTTGGTTGATATTGTTGTTCTTCCTGTGAGGTTGCAAACCTGTTTAGCTCCTTCAGTCCTTTCTCTAACTCCTCCATTGGAGACCCTTTGCTCAGTCCAATGGTTGGCTGTGAACATCCACCTCTGTATTTGTCAGTCTCTTGCAGAGCCTCTGAGGAGACAGCTATATTAGGCTCCTGTCAGCAAGCACTTCTTGGTATCTGCAATAGTGTCTGGACTTCCTTAGTTCTGGACACTGCTCTTAATACTTTCATAGAGTACATCACATAGAGTACATGCAACTACATAAACTATTTTTAATTTATTCTTAGAAAAATTCATACATGTTATAATGCATCTTAATCATATCCATACCAGCTTCATTCCTCAAACTCCCCTGGTCCAAGTCATTTACAAAATATCACACTGAGTCCAATCAACATTGCCCATATGCACATGTCTGTGGGATGATCCACTAGGACACAGGCAACCTGCCAATGGCCACTCCTCAAGGAAAACCGACTTTCCCTTCCCCAGTAGCTATCAAATGTCCTCAGCTGGGGATGGAACCAGAGGAGGTTCTCCCTCTCCTTGCTGGACATCTTAACTGGCTTGGTAGGTGTGGGTATCTACAGTTGTTTTGAGTTTATGTGTTTAATAGTCATATCATGTATATCAATAGACCAGCATCTCACAGCACTACTCCCTATCTTCTGGCTTCAAAAACAAAACAAAATAAGACCAGGTAAAGATTTGTAGTTAGGTGAAGTTGAGTTATGTGAACTTATTGTTTGATATTTTTCTTGGTAATGACTAAGTTTAAAAGTTTGTTCCACATATTAATAGCACTAAAATGTCACATGGCCTGCAGAAAAGGGGTGGGTAGATATCAAGAGTGCTGAGTGAGAAGGTATCAAAACCATGAACTATTGGATGTGGACAGTCCATGAACATGTTAGCCCCTCGATGTATATATCAATGTAAATTGAAATGGACTTGGAAATGGTGACTGACTGACAAGTCTACATTCACTGGGCTCTCCCTCAAGTAGGTGATAAAAGAGACACTTCTGTGCGGTTTACCTATCTTTATGTAAATCTACCACAGTGCTTCATATTGTGTTACATCTGCCTTGTTCCACTTCTGAGAAATGTACAACCTAGCTGAAGTGAGTGTAGATCTGAAATGAAGTACGTGGCAGTGGCTTGTCACAAATGATGAGATGGGAAGACAACTGGAGAGAGCAGGTTCACATCATATGAAGGGTAGATTCACATCATATGATAGGAATTCCAGGGGATGAGACACTGCTGATAGCTTTGGGAGTAGCTTCTGCCATGCTGGGGAAAAAAACCAAAAAATGAAAAACTAACAAACTAACAGGAACTAACAAATAACGAACGAACGAACGAACGAACGAACGAACTAACTAACTAACTAACTAACTAACTAACTAACTAACTAACTAACACCCTGCAGCTTTGGTCTATTTGCCTGGGTCCAGTTAGGTCTCTTATCTTTAATGCTTTCTTCTTGGGGTACCTGGTTGGGTGAACGTGGAGTATGTTGCTGTTTAGTTACTTTTTAGGTCGCTGTGATAAAATATCACTACAAAAGCCACTTAAGGGGGAAGGGCTTACTGTGGGTGACAGTCGCAGGTTACAGTGCACCCTGGCAGGGCAGTCAGAGCATCAGGAACTGGAGGCAGCTGTCCATGTCACTGTCACAGTCGAAAAGTAAGAGGTTTTGGATATTTATGTTCAGCTCAGGTTCTTCACTTTTATATCGTGTAGGGTTCAAGCCTAGGGAATGGAACTACCCACTGTAGACAGATTTCCCTCCCCAATGTAATTCTAGATCTCAAGCTGACCATTGAGATTAATCACCACAGTGTGAAACCATCAATGAAGCTAAAGTATCAGTTGAAGGCCAGATCTGTGCTCTTTCTGCTCTTCCTGACGAACTTTCAGGAGCTAGATAAAGACACGTGACCAAGACACGTGACCATCATCCTTTGTTCTTCTTGCCCTTAG
Seq C2 exon
GATCTCTGTGTGAGTGGTGCGCAGCTACTCCATTTTAAAAGCTCCCTTGTGGAGGAAGCAGTCAATGAGCTAATAAACATGTTATTGGATGTGGATGTACCACCTGAAGAAGCAGCCGAAAACGTCTGCCATGAGAACGCCAGTCCTAGCGGTAACACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-Dnahc5:NM_133365:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.309
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: