BtaINT0050566 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59360758-59363735:+
Coord C1 exon
chr20:59360758-59360998
Coord A exon
chr20:59360999-59363535
Coord C2 exon
chr20:59363536-59363735
Length
2537 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
AGAGCTTTCATTTTTAATAGGAC
3' ss Score
6.9
Exon sequences
Seq C1 exon
GTGTCGGAAGCTGCCTCGAGCCTTGAAGGACTGGCAGGCCTTTTTGGATCTGAAGAAGACCATTGATGACTTTAGTGAGTGTTGCCCACTGCTGGAGCACATGGCCAGTAAGGCCATGATGGAACGGCACTGGGAAAGGATAATGGCTGTCACTGGGCACAGTCTGGATGTGGGGAATGAAACTTTCAAGTTAAGAAATATCATGGAAGCACCTCTTCTGAAATACAAGGAGGAAATAGAG
Seq A exon
GTATGATGACAGAGGATACGATGTCATGGGAGACTGGAAGGTCCCAGGGGATTTATTAGATAATTTTCCTACCTTATGGACTGTTGGAGAAGGGAATCAGGCTAGGACAATCAAAACTCTTTTCCTGTGAGTCAGCTTTTACTTCTTCAAGAAATGTTTATGTGATACATTGTGTTAAGTGCTGGGGACAGAAGGATGCATTTCTGCCTTCATAGACCATTAAAAATTTGTATCATTAAATAATTGTTCAAATGAAGGTGCAGGTACAAGCTTCAGTAGATGAAGTGTGCTGCTCTATGAGAGCCTGTAATAACGGGGTGGACCTGTATGGTGGTGGAGGGAGAGTGATGAAAATCAAGAAGACTGGGGTTCATGGGCATGACTTTTGGGTGAAGGGGGTGTGCTTGTGTGGTGAGGGGGTGAGGGGCTTGGAAAATGCAGAGAAGGCAGTGTTGGGCAGGTGGAACAGCAGGTGTGAAGGGGCTGAGGTGTAGGTATAGGGGACTGAAAGGCTGGGGTGGCTGAGGTGTGAAGGTGGGGGCAGAGAGACAGCTGAAGATGGGAGGTGGAGAGGGGCTAGAACTTGCCATTAATTTCAATCTTGGGAGCAATCGCGAGCCCTCTGGGAGATATATTTTGATTAGGGGATGGTGTGGTTAAATTTGCAATTTGTAAAGATCACTCTGGTAGCTGTGAGGAGAAAGGATTGGAAGATGTCAAGGGGCAATCCTAGGAAAACTTACTGGGAGCTTATATGAATATCCCAAGCAAGAGATAATGCATCAGCTGGGAGGGCAGGGAAAGAAGCTGGAGTAGAGGAGAAAAGATTGAAGAGGTCATTAGGAGATAAAACTGGGTAGAATTTGATGATGGAGGGAACGTGATAAGGAAACAGGAGGGGCTAGGGATGAACCCTAGATTTCTTGCTGAGAGATCTAGGTGAATGATGGTGCTTATGACTGAGACGGGGAAAACTGAAAGGGAATCAGGTGGAATGATAAGGTGCAAAGACCGTGAGCTTGGTTTGGGCATCAGTTCGATATTCACAGATTGCGTTTTGGGTTCCCATGATACATCCAAGCAGAGGAGCCCAGTAGGCAAATGGATGTGGGATTTTCCTGGAGATACAGACGGTTGCTGGCTGCATGGTGGTGGAAGAACTCATCCCGACAGGGAGTGCAGTGTGAGTCGGGCAGTCGGCAAGGAGGAGTTTGATTAACGGTCCAGGAGAAGACAAGGCTGCAGAGAAGATGGGGACAGTGACCCAAGAACTAGGAAGATGGCAGGTTTCTGTTGATTCCTTCGTCTCGTACTGCATTGATTCGACTTCAGAGTTAAATCAGAGACACATTAAATTGTTTTCCCCAAACTTTAAAGTTTTTATTTTGTATTGAGATTTAGTCGATTAACAATGTTGTGGTAGTTTCAGGAGAGACATGTTAAATTTTGAGTCTTTTATTAAAGCTGTAAAATTAAAATGTTATTGCATTCCTTTTTAATCCCAATTTTTATTGAGATATAATTGACATTTGACATTGTGTAAATTTAAGAATAATGATTTGATACATTTATCTTGCAATATAACCTTCAGTGTGTTAGCTAACACCTCAATTATCATTTCTTCTACTGGTGGGAACAATTTAGATCTAGTCTTTTAGGAAATTTGATGTTCAGAATACAGTTTTGTTGTCTGTAATCACTGAACTGTGGATTAGATCTCTAGGACTTCTTTATCTACTATTTGCAAATAGATAGAACATCTTTACCATTCCCATACCTTCAGCCCCTGGTAACTACCATTTCACTTTCTTTTCTTTCAGGGTTTTTTCCTTCTTTCTTTTTTTTTAAGAGTCCACATACAAGGACTACCCTACAGTATTTCAGTTTTTCTCTCTCATTTAACCCAATGCCCTCAAGGCCCATCCATGCTGTCACACATGGCAGGATTTCCTTTTTCCTCATGGCTGAATGGTACTTCACTTCTGCACATCGTTTCTGTCATCTTTATTCTGGAGTAGTTTGGTGGAAAATTTTACAAATTAGGGTAAATCTTTATCTATATATCTCTGTAGACACTGTTATGTGCTGTGCTTAGTCGCTCAGTCATGTCCGACTCTTTGCGACCTCATGGACTGTTGCCCACCAGGCTCCTCTGTCGTTGGGATTTCCCTGGCAAGAATGCTGGAGAGGGATACTATTTTCTCCTCCAGAGCATCTTTCTTACCCAGGGACTGAACCCCCATCTCTTATGTCTCCTGCACTGGTAAGCGCATTCTTAACCACTAGCACCACCTGGAAGCCCCCAGAGATCTTCCTTTCCACACTGGGAGTCGAACCTGGCCCGCTTGGGTGAAAATCAGGCATCCGAACTGCTACATCATGTGGGAGAGGACATACTATAGTCTGGATCTGGAAATATATAAGTATTTATAGATACATATAAAAAAAGGAGTGAAGACAGGATCTTTGCTGAATTGACTATTCAAGAAGGATGTGTGACTTTGGTGTGATTAAATGAGAGCTTTCATTTTTAATAG
Seq C2 exon
GACATCTGTATCAGTGCCGTGAAAGAGAGGGACATTGAACAAAAGCTGAAGCAAGTGATTAACGAATGGGACAACAAAACATTCACATTTGGCAGCTTTAAAACCCGTGGAGAGCTCCTCCTGAGAGGAGACAGTACGTCAGAAATCATTGCCAACATGGAAGACAGCTTGATGTTACTGGGTTCCCTCCTGAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(19.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]