RnoINT0048964 @ rn6
Intron Retention
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:81025244-81027253:+
Coord C1 exon
chr2:81025244-81025484
Coord A exon
chr2:81025485-81027053
Coord C2 exon
chr2:81027054-81027253
Length
1569 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCG
5' ss Score
8.1
3' ss Seq
AGAGCTTATTCTGTTCATAGGAC
3' ss Score
6.35
Exon sequences
Seq C1 exon
GTGTCGGAAGCTGCCCCGGGCCCTGAAGGATTGGCAGGCCTTTCTGGACATGAAGAAGACCATTGATGACTTTAGCGAGTGTTGCCCACTGCTGGAGTACATGGCTAGTAACGCCATGGTAGAGAGGCACTGGCAGAGGATAACCACTCTCACTGGGCACAGTCTGGATGTGGGCAATGAAACCTTTAAGTTACGAAATATCATGGAGGTTCCTCTTTTGAAATACAAAGAGGAAATTGAG
Seq A exon
GTATCGTTGATAGGGAGTAGAACCATACTTTCTCGTCTTCTATCCATCAACCCCTCATTTACTGAATGTTACTATGTGAAAAGGTCTATGTTGGAAATACAGAGAGGTATTCTTGTTTTTTTTTAATTTATATAATGAATGTAATCATTCATACAAATGAAGGTATTGCTCTAAGCTGTACCAAATTGCCCTCAAAGGAAAGTATGCTGCATGCCCCAGGCAAGCCTGTGACAAAGGACTTGTCTTATCTGGGTTCAAGTCTGTCTGGGTGAAAGGAATGTAGTTGTATTCTGGAGATGAGAGAGGTTCCGAAAGTGCAAATAAGACTATTCCAGGCAGAAAGTACATCATTTATGAAGCATGTAGGAAGAACCAGAGAATGGCTCTGTGGCAATCTGGTATGGATGAGGAGATAAAAGAACTGTTAAGGCCAGAGAAGTGGAGTGTGTGTTGAGCATGCCATTGGTTTTCATTTCCAGGGTAATGTGGAGTCACCTGGGGGATGTGTCTTCATTGGGAATGAGATAGCACTGCATTTTATAGAGATCAACTTGATAGTTGGTTGCAGAAAGATGATGATAAGAAGAGAATGATGGGAAAACCTACTTAGGGATTGTGATAGGGAAGAGAGAATGATTTGTTGATAGAGAGTAGAGGTCATGAGGCTGAAAAGTTAAGAAAAGATCTATGAGATTTTTAGGGAGTAAAATTGGAGAGAATTTGTTGGAGGAGCATGATGGGAAATATGGGAAATATGGTAGTAAGGGTAGGACAACAAAGAACTCTAGCTTTCTTTCTCAGTGCTCTGCTCGGATCACAGAGACCAACAATAAATGTTGTAAGAAATCAGATTGGGTGATAGGTGCAAAGATCAAGCTTGAACGTGGGCAGGGTCATGAGTTGAGCTTATGGTTTGTTGAAACATCCACACAGTTACACGAGGAGGCAAATATATGTGGGTTCTGCCTGGAGATATAAAGGCTACTGAATACCTGGACAGAGATGAAGTCACCCAGAAAATGAACACTGTGAGAAGAAATGGGGTAAAGACGGTTCAGCCAGGGGTCCAGGAGAAGACGCTGTGATGGAACCTGTGGCTGGAGAGCAGGAAGAGCTCAGATTTCCACTGATTCTCTCCTCTCACAGTGCACCTATTGACCTGAGAGGGAAGTCAGGACAGTGAATCTTTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCCAAATCCCCAACCTCAACAGTGAATCTTAAGCCTGTCATTATATTGTAAAATGCAAAATGATACTGAATCTTTTTTGTTACTTCTTTTACTGACATTGATGGAAAATTTTAGAAATTAAGGCTCTATTTAGACATGCCTTTATCGTCCTGTCCCTCTATTTGTATTTATTCAGACATTGAGTTTGATATTCTCAAACACAGAATCTTTAAATGTCTATGAAGTGAGTAAGAGGAGCTCTCGTGGACTTAGACTACCAATAAGACATAACTTTCCTGGGATGACTGAGAGCTTATTCTGTTCATAG
Seq C2 exon
GACATTTGCATCAGTGCAGTGAAGGAGAGAGACATTGAGCAAAAGCTGAAGCAAGTGATCAATGAGTGGGACAACAAAACGTTAACATTCAGCAGCTTTAAGACCCGTGGAGAACTCCTCCTGAGAGGAGACAGTACCTCAGAAGTCATTGCCAGCATGGAGGACAGCTTGATGCTATTGGGCTCTCTCCTGAGCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363:ENSRNOT00000074689:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(19.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTTAGCGAGTGTTGCCCA
R:
ATCAAGCTGTCCTCCATGCTG
Band lengths:
347-1916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]