MmuINT0050911 @ mm10
Intron Retention
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28297008-28299280:+
Coord C1 exon
chr15:28297008-28297248
Coord A exon
chr15:28297249-28299080
Coord C2 exon
chr15:28299081-28299280
Length
1832 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAG
5' ss Score
7.13
3' ss Seq
AGAGCTTACTCTGTTGACAGGAC
3' ss Score
5.04
Exon sequences
Seq C1 exon
GTGTCGGAAGCTGCCTCGGGCCCTGAAGGATTGGCAGGCCTTTCTGGATCTGAAGAAGACCATTGATGACTTCAGTGAGTGCTGTCCATTGCTGGAGTACATGGCCAGTAACGCCATGGTGGAACGACACTGGCAGAGGATCACTGCTCTCACTGGGCACAGTCTGGATGTGGGCAATGAGACCTTTAAGTTACGAAATATCATGGAAGCTCCTCTGCTAAAATACAAAGAGGAAATTGAG
Seq A exon
GTATAGTTGATAGGGAGTAGAACAATGTATTCCTATTACCCATCCACCAACTCCTCATTTACTGAGTGCTATTGTGTATTCTTGCCTTTTTAGATGGCATAAAATAATGTAATTGTTTATACAAATGAAGGCATAGCTATAAGCTGTAGCAAATTGCTCTGGAAGGAAAGTATGCTGATTGCCCCTGGAAAGCCTGTGACAAAGGACTTGTCTTATCTGGGTTCAAGTCTGTCTGGGTGAAAGGAATGTAGTTGTATTCTGGAGATGAGAGGTTGTAAATATGCAAATAAAACCATTCCAGGCAGGCAGGAAGAACATCATTTGTGAAGTGTATAGGAAGAACCAGAGGACAGCTTTGTGGCCATCTGCTATGGCCACGGAGAGAAAGGAACTGTTGAGGCCAGCGAAGTGGAGTATGTGTGGAGCATGCCATTGGTTTCGGTCTCCAGAGTAATGTGGAGCCACCTGGGAGATGTGTCTTCACTGGAGATGAGATCTCATTGCATTTTGTAAAGATCAACCTGATAGTGGTAAGCAGAAAGATGAGGACAAGAAGGGAGTGAGGAGAAAACCTACTCAGAGATTGTGAAAGGTTAGGGAAGAGGGAATGATTTGTTGTCGGAGAGTAGAGGGCATGAAGCTGAAGAGTTAAAAAAAGATCTGTGAGATTTGTAGGGAGTAAAACTGGACAGAATTTGTTGAAGGAAGGGCATGATGGCAAAGGTGGGACAAGGTAGTAATGGTGACAACAAAGAGCTCTAGCCTCCTTCCTGAGAGCTCTGCATGGATCCCAGGGCTGCTCATGCATCACAGAGACTGTCAATGAATGTTGCAAGAAGTCAGCTTGGGTGATAAGCGCAAAGACAGAGCTTGAACTTGGGCAGGATCATGGGTTGTGCTTGTGGTTTTGTTGAAACATTCACACTGTTACATGAGGAGGCAAATATAGGAGGGTTCCCCCTGGAGATATAAAGGCTATTTACCTGGACAGAGATGAACTCACCCAGAAAATGAACACTGTGAGAGAGAATGAGAGAATCAGCCAAGGGTCCAGGAGAAGGTGCTGTGATGGAGACTGTGACTGGAAAGCAGGAAGAACTCATATTTCTGCCAATTCTCTCCTCTCACACTGCACTTATTGACCTGAGAGGGAGATCAGGACAGTGAGTCTTAAGCCTGAGATTATACTGTAAAATGCAAAATGATATTGAATCTTTTATTGTCACTTCTTTTTCTGAGATGGATGGAAAATTTTAGAAATGAAGGTTCTATCTAGACCTGCCTTTATCTTCCTCTTCTTCTGTTTGTATTTATTCAGACGTTCAAACCGTTTATGACATTGCCTTTGATATTTGCAAACACAGAATCTTTTTTTTTAAATATTTTTTATTAGGTATTTTCCTCATTTATGTTTCCCCCATACCCTCCCCCCCCCACACTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATGAAGTTTGCAAGTCCAATGGGCCTCTCTTTCTAGTGATGTCTGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTATTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCGCAAACACAGAATCTTTAAATGCATATGAAATAAACAAGAGGAGCTCTTGTGGACTTAGACTACTACTAAGATGTAACTTTCCTGGGATAACTGAGAGCTTACTCTGTTGACAG
Seq C2 exon
GACATTTGCATCAGTGCCGTGAAGGAGAGAGACATTGAGCAAAAGCTGAGGCAAGTGATCAATGAGTGGGACAACAAAACATTAACATTTAGTGGCTTTAAGACCCGTGGAGAACTCCTCCTGAGAGGAGACAGTACCTCCGAAGTCATCGCCAGCATGGAGGATAGCTTGATGCTGCTGGGCTCTCTCCTTAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262:ENSMUST00000067048:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(19.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTACATGGCCAGTAACGC
R:
TGTTGCTAAGGAGAGAGCCCA
Band lengths:
347-2179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types