GgaINT0093168 @ galGal4
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76633954-76634889:+
Coord C1 exon
chr2:76633954-76634194
Coord A exon
chr2:76634195-76634689
Coord C2 exon
chr2:76634690-76634889
Length
495 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTC
5' ss Score
6.35
3' ss Seq
ACATTCTATTTATTTAAAAGGAT
3' ss Score
7.04
Exon sequences
Seq C1 exon
ATGCCATAAGCTTCCTCGTGGTGTAAAGGAGTGGCAGGCCTTTTTTGACCTAAAGAAGACTATTGAAGACTTCTGTGAATGTTGCCCGTTGCTGGAACATATGTCAAGTAAAGCAATGATGCCTCGGCACTGGAAGCGGATAACAGAACTCACTGAACACAACTTTGCTGTAGAAGGTGAAACACTGAGACTGAAGAATATAATGGAGGCTCCTCTACTCAGATATAAAGAGGAAATAGAG
Seq A exon
GTATTCTGAAGGAACAGAAATGGATGCATGAAACAAAATAATCTGCTCAAATAGATATCTGAGTAGCAGTATTAAGAGGGAAAACTATCTGCAAAGGAAGAACCAAGAAATAGACTATCAGTAACGTTTTCTGTATAAAATAATGACATATATTGTGGTGTAAATTCTATTAAACATGTAATCTGGCTCACAATTAATTCATTTGTGAGCATGTTTTACAGTATTAAAGGTATGAAAAATAATCATTGTTATCATTCTATTAGCCACACTAACATTACCATATTGTGAATTGATACATGGATTATTGGTTATGGTGTTTTCATGTCTTCAGATCTTTCTACTTAGAATCGTAGAATGGCTTGGATTGGAAGGGACCTCCGCTTGATAAATAGTTGCTCGTCAGCCTAACCAAGGCTAAAGGAAATAACAGTTAGATTTGGATACCAAAGACCTGAATGATTTATAACTTGTTCTGACATTCTATTTATTTAAAAG
Seq C2 exon
GATATCTGCATAAGTGCTGTGAAGGAGAGAGACATTGAACAGAAGTTAAAACAAGTGATAGCTGAATGGGATAACAAAACATTTATCTTTGCAAACTTTAAAACCCGTGGGGAACTTCTTCTAAGAGGAGATAGCATATCAGAAACAATTGCTACCATGGAGGACAGCTTGATGATTCTTGGTTCTCTCATGAGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021223:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(19.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(16.0=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGGTGTAAAGGAGTGGC
R:
AGAAGAAGTTCCCCACGGGTT
Band lengths:
349-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]