BtaINT0050599 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59470717-59477100:+
Coord C1 exon
chr20:59470717-59470893
Coord A exon
chr20:59470894-59476896
Coord C2 exon
chr20:59476897-59477100
Length
6003 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TAACCTCCTCTCCTCCCCAGACC
3' ss Score
10.15
Exon sequences
Seq C1 exon
GTCTTAAAAGAAGTGACAATGAAAGCACAGGCTGCTGAAAAGGTCAAAGCTGAGGTCCAGAAGGTGAAGGACAAAGCCCAGGCCATTGTCGACAGCATCTCTAAAGATAAAGCCATTGCTGAGGAAAAACTGGAAGCAGCAAAGCCAGCATTAGAAGAAGCAGAAGCAGCCTTGCAG
Seq A exon
GTACATCTTTGTGATATAACAGATGTCATCTTCTAGGGCCTCGGAGGAAGATTAGGCAGAAAAGATGAATAACAACGAAGAAATGTTCTACTGCTTCAGACCAAAGCTCTCTTCACTGGAATGATTTCAAGTGGTATTTTCTGCTTGGAGATGTTATTTGCTTTTTTTAGATATTGCAGGTGGCACTTCACATATTATCTTCTCACTCACAAGTGATGGGCAGTGCCATATAATAGGGGTCTGGGTGCCAGCTTCTCATTTCAACTCTGTTACTAATAAGCTGTGTGACGTTGGAAAAGTCACACAAAATTCCTAAAATAGTTTTGTCACTCATTCATTGAGGATGTTAGAGTAGGTTAGTAAGATACAGCTTTCTTTGAGTGTACATATAAATTATCCAAACAAAGGACTGCTGATCTAGTGCTACGCATTAAGGTCAGGCTTTGATCAGGCTTCCAACACAATGCAATATGTGGCAATATCATAAATGATGAAATTAGAAACGAGGTTGGATTCTGGGAAAATATGTTGACTCTAGTGAAGTAGGCTATGTCTTCAAGGGCTGGCCCTTTTTGAGACTGGTCTAGTTTGAGATGTTTTGGATTCAAGTCATTGTTTTTACTGTTTCGTCCCTGGTGGTCCAGTGGTTAACATTCTGGTCCAGTGGTTAACTTTCTGCACTTCCAATGCAGTGGGTGCGGTTCAATCCCTGGTTGGGAATAAAATCCTTAGTCTACTCATCTATTGTCTTATGTTATTGACTCTTGGCTTAGAAAGTGGCTGGAGAAATGGAACACTGCTGACCTGTCCATTGCTAATTCAAGTTATATAACCTCAATTGAACTTGCATCATAATGTGATGTAGTTATTATTTTTTGCTACCTATCTTATTTTCACACTTCCTGAAACACTTACAAATTTTTTTGATCCACGTGAAGTCTTTAAGCTTTCTGTCAGTATACAATGTATTGTATAAGATAATTTTTACTCTAGAGACAGTGAAGATGTTGCCTTCTTTTCTTTTCTTTCCAAAGTTTCACACCATTCTTACAGGTGATGTATCTTTCCTTACTGTTTCTTCATTCCTTCTTGCACTGGCTAAGCTGTCCTCCTTAATCCATGAAGTCTTCCAGGGTCCTTAGCCTTTCAGATTGGTGGATACCTCATCTTCCCCAGTCCCACTTTTAAAAGACCAATTTATGAAGTTGTGATTGATATATAAAAAGCCGTACATATTTAATATGTATAGCTTTGTGAGTTTGGGATGAGTGCACACCTATGAAAACATCACCACCTTCAAGGCCACAGACACATCCATCAACTCTCAAAGTTTCCACCTGCTCCCTTTATTATTGTTTTTTTTTCTTTAAAATTTGTATTTATTTATTTTTATTAGAGTATAGTTGCTTTAAATTTGTGTTAGTTTCAATTTTACAGTAAAATGAATCAGCCACACACTTACATATACACCTCCCCCTTTTGGACCTCCTTCCCATTTAGGTCACCACGGAGCATTAAGCAGAGTTCCCTGTGCTGTACAGTAGGTTCTCACCAGTTATCTATGTATCAATAGTATATGTGTGTCAATCCTAATCTCTCAATTCCTCCCACCCTTCCTTTCCCCCTTGGTATCCATATATTTGTTCCCTAGCTCTGTGTCTCTATTTCTGCTTTGCACATAAGATCACCTGTACCATTTTTTTAGATTCCACATATATGCATTAATATATGATCTTTGTGTTTCTTTTTCTGACTTACTTCACTCGTATATGACACTCCCTAGGTCCATTCGCATCTCTACAAATGACCTGGTGTCATTCCTTTTTATGGCTGAGTAGTATTCCACTGTAAATGTGTACCATATCTTCTTTATCCATTTCTCTGTTGATAGACATTTAGGTAGCTCCCATGTCCTGCCTACTGCAAATAGTACTGTTATGAACATTGGAGTGCATGTATCTTTTTGATTATGATTTTCTCTGGCTTTGTGCCTAGTAGTGGGATTACTGGATCATAGGGTAAGTCTGTTTTTCTTATTGGTATTTTTTTTGATAAGAACACAACTTAAGATCTACCCATTAACAAATTTCAAGTATATAATAAAGTATTGATAACTGTGGGCACTGTGCTATAGAGTAGATCTCTAGAATTTATCTTGCATAACTAAAACTTTCTACCCTTTGACCATCACCTTCCATTTCCTTCTTCCTTCAGCCCCTGGCAACACCATTCTACTCTCTACTTCTATGAGTTTATTTGGGCTTCCACATATAAATGAGATCATGCAGCATTTTTCTTTCATGTTTAGCTTATCTCCCTTGACAAAATATATTCCAGGTCCATCCATACTGTTGCAAATGGCAGAATTTCCATTATTGAACCCTGAATAATATTCCACTGGATATAAATACCACATTTTCTTTATCCATTCATCCATCAATGGAGATTTACATTGCTTCCATGTCTTGGCCATTGTGAATAATACTGCAGCAAACATAAGGGTGCAGATATCTCTTTAAGATCCTGAACATATCCTCCCCCTGCCCATTTTAAGACACTCTGGCTCCACTGAGCGTCTTTGATCAATAGAGAGAAGACAAGGATAGTGTAAAGAAACTTCTAAACCTTTATTAGACTTGTGATACTAACAGCACGATAGGAACGGAGCTTGTGGCATCTCAGTTCTTACATCTCAGTCTACATTTTCATAAGATTTCAAAAGCCTGACATGTTTTTTAATATTATAAAATATTTTCCAGTATCCTCCTAATTTAGTACTCTCTACCACTATAATATTCAGCAACACCATCAATACAGAAATGTCTGGGAATAAGGGCAAGGTGATTGGGGTATGTAGGGGAACTTTTCAATAATTTCCTTCACTGGTTCTGTCTTCATTTTATTGCCTCCTTGTAAGTTTTGAAATCTGGTACTACCAATTCATACTAAGAAAATTCCAGGTACATTCAAACTCTGTCTTGGCATCAGCCATGTAAACCTACAAAACAAATAAAAAACAGCAAAGAATGTGTCAATTCTTATCCCAATGCTAATCTGACCTGACTGCACACACACTCACATACACACACACATATGTAGTAGTCATATTTCTTTGCCTGTAGGAGAAAGAGAAATCTAATATTTAGCTGAAATAGGTTGAACTTCAGCTATACCCCCACCCCCAATTCATTTTACATGGATCCCCAACATAATTGAGTCCAAGTATGTTTGAGATTTCCCCCTTTTAAAGCTAAAGGGAAAATAAACAGATAGGACCTAATCAAACTTATAAGCCTTTGCATAGCAAAGGAAACCATAAACAAAATGAAAAGACAGCCCACAGACAGTGAGAAAATATTTGCAAATGATGAGACCAATAAAGGGTTAATTTCCAAAATATACAAACAACTCATATAACTCAATTAAAAAAAAAAAAAAAACCAACCAAAAAGTGAGCACAAGATCTAAATAGACATTTCTCCAAAGAAGACATACAAATGGCCAACAGACACATGGAAAGATGCTCAACATTACTAATTATTAGAGAAATTAAATCAAAACTGCAATGAGATATCATTTCACACCAGTCAGAATGGCCATCAGCAAAAAGTCTTACAAATAATAAATGCTGGAGAGGGTGTGGGAAAAAAGGAGCCCTCCCACACTGTCGGTGAAAATGTAAACTGGTACAGCTTCTATGGAGAACAATGTGAAGGTCCCTTAGGCATTAACAACAGAGCTACCATGTGGTCCTGCAGTCTCACTTCTGGGCATATATCCAGAGAAAACTATCATTTGAAAGGATACATGCATCTCAGTTTTCACTGAAGCACTATTTACAATAGCCAAGACATGGGAGCGACCTAAATGTCCATCAACACATAAGTGGATAAAAAAGATGTGGTACATATATACAGTGGAACATTTCTCAGCCATGAAAAAATGAAATATGTTATTTGCAGCAACATGGATTATCATATTAAGTGAAGTAAGTTGTAAGGAGAAAGGCAAATACCGTATGGTATCACTTATATATGGATACAAAGGAACTTATCTATGAAGCAGAAATAGAACAGAGAACAGACTTGTGGTTGCTAAAGTGCTGGGGGAAGGGTTGGATTGGGAGTTTAGGGTTAGAAGATGCAAACTATTGTGTGTGTGTGTATATATATATATATATGAATCACTATACACCTGAAACTAATACATTGTAAATCAACTATACTTTGATAAAATAAATTTTAAAACAAACAAACATGCTTGGGGCTGGTGCACTGGGACGACCCAGAGGGATGGTACAGGGAGGGAGGAGGGAGGAGGGTTCAGGATGGGGAACACGTGTATACCTGTGGCGGATTCATGTTGATATATGGCAAAACCAATACAATATTGTAAAGTTAAAAAATAAAATTAAAAAACAAACAAAAAGCTAAAGTTAAATAAGCATGCCAGACCCTTTTATATCCACTTTAATTTGATGCTGCTTTCCCTATTGGCAGCTATTATGTTTCCCTCCTTTCTCTTTTATAGCCAAATATCTCAAATGAAGGTCTGTCTGCTATTTCCAGTTTTTTTTTTTTTTTAACCTCAAATTCTCCTTCACTTCCAGCTGTCTAGAATTCACAAATGCTAGTGTATTGAAACAGTCCTTTTCAAAGTAGATAGTTACCTTTCTAATTACCAGGTTCAGTGGTTTTCTTTTCTTCTTATTTTCCCCAAAATTCTCAGAGAAAAGATCATTAGCTTTGATATGAAGTTCATGGGGTACCTTCCTTTGACAGGAGGGTTGCAAATGGAAATCAGATGAAAGGTCTCCAAGGCCTAGAAGGAATGAAGGTGCAGTATGTCCTAGAAATAGGACAGTATCAGATGCTTATTTTTGTGTTTCCAATGCTTATTCCATTGATAGAACTGATAGAACACTTATTATCGACCACAACACGTCTATGTGACTGTTAAGTACTTTACTGTATAAGAACCTTTGTATGGAACAGAACTTTTCTAAGAGCTTAGTGAAATTCCTGTTGCTCATGTTCCATCATCTAAAGGTCAGTTTCCAGCTAAGAAACCTCTAATTATGCAACTGGCAGCCCTGCGGCTACCCACTGATGTCGGTCCAAGGTGACGAGCTGTAAGAGAGTCAGATTCTTGACCTACATAACTAATGAGTAAAAAGAGCACTGTAAGTCCTGGAGTTTCCCTGGTTGAGAATCGCTGGAATCTACTGTAGAGCTGATGATTCTTTTCCTTTCAGATCTGCTTCCTTTTCTGACACTAAGTGGCTGTTACAATTTTAGAGAAGTCACGGCTCCTTATCAGAGGGCGAACATGTCTCTCACTGTGTCTCCTCTGGCTGTCACTTTGCATTGTAAAAATTTGAACTTGTGGGGATGTGTGTTTCTTTGGGATTAAATATGCTTCTAGCCCTCATGACTGCATCAAACTTAAAAATGCTTGCGCTCCTCTGTTGAAGTACAGTAAGTCCCCTACATATATATGAATGTTTTAAGTTGTGAACTTTCAAAGATGCGAATGTGGATTCTATCAGTGTCAGGCATGAGTGAAACCCCGACTTGCCCTCCGTCTCCTATTGCTGACAATCCTTCAGCTCTACCATCTCCTACCCCTTCTCCCTCCTCTAGTCAGTGACACTTCTTGCCTATTCACTCTATGCCAGCCCCTGTGTGCCAGCTGCTGTCCTGTTACTACTGTACCTTTCAAGGTACTGTGTACTGTAGGATTAAAAGTGTTTTGTATCTGTTCGCTTTTTATGTATTATTTGTGGGAAAAGTATTATAAACCTATTACAGTACAGTACTATGTCACTGACTGTGTACCCAGGCTAACTTTGTTGGACTTACAAACAAATTGGACTTACAGATGTGCTCACAGAATGGAACTTGCTCATAGGTAGGGGACTTCCTATAGCAGTCTTTGGAGAGTAAATGTTTGTTTCCACTTTTCCTGTCTCAAGACTGGATGATAACCTCCTCTCCTCCCCAG
Seq C2 exon
ACCATCAAGCCTTCCGACATCGCTACTGTCCGCACGCTAGGCCGACCCCCTCATCTCATCATGAGGATCATGGATTGTGTGCTGCTGCTGTTTCAGAGGAAAGTCAATGCAGTGAAAATTGATCTGGAGAAAAGCTGCACAGTTCCTTCCTGGCAGGAATCTTTAAAACTGATGACAGCAGGGAACTTTCTACAGAATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(16.6=100)
A:
NA
C2:
PF127772=MT=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]