GgaINT0093198 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78582325-78583557:+
Coord C1 exon
chr2:78582325-78582501
Coord A exon
chr2:78582502-78583353
Coord C2 exon
chr2:78583354-78583557
Length
852 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CTTTTGTTTTATTTTTGTAGACA
3' ss Score
8.79
Exon sequences
Seq C1 exon
GTATTGAAGGAAGTTACTGTAAAAGCACAGGCTGCTGAGAAGGTGAAGGCTGAAGTTCAGAAAGTGAAAGACAAAGCCCAAGCTATTGTGGACAGCATCTCAGTTGATAAAGCCATTGCTGAAGAAAAGTTAGAAGCTGCTAAGCCTGCTTTGGAAGAGGCGGAAGCAGCCTTACAG
Seq A exon
GTTGGTACTAAAACCTTGCACTGAGTATAACATTTTCTCCACCTAAGAAAATGTGCTTCTTTGAAAACATGTGAGGTTTCAGATGTTCTGTGTAACTCCTCGATTGGCAGAAGATGTATACAAATAGATATATTTATCTTGAGGTTGTTCAAGTTTAGTTTTGTTTGTCTCTTTCCACCCAAATGCCAAACCCAAAATAGGCAATCAGTTGTTCAGCAAATGGCCAATTTTAATTTTCAATTGAAACTCTGGTTGATATATGATGTGCTGCTGGTTGATAATATGCCAGTAACTGAGTGTACATGTTACGGTGTTAGATTTGCACCCTTGACTGACTTTCCCATATTTAATACAACACAGGTTTCTTACATTATTATGATTTATTTAATTTTCTCAAAGGTTTACTTCTACATCAGGAACTTGTCCAGAATAATAAAGCAGAAGATGCAAAGGTATATATGTATGTGGCCTTCTCACTGGTTCCTTTCCTTCACCTTCAGTTGCCAATTATCAACAGAATGCATTTTCCTTTCTAGACTGAGTTTCTTGTAAATAGGTTTGCATTAAAATAGAAAAAGAAGATAAAATTTCAGAATATTGTTGTCATGCTAGGATGGAGTCATTTTAAGAATTTAGGTGCTGCTGTGAGGTGGCTGAACTGCTCCTAGCAGTTGCTATGAAGCAGTAGTCAAATTATAGTTGAAGGGTCTGTACAGCTTCATGCTTCTGAGAGATAAAATTATTTTAAATCAAAAAGAAAAATTTTCTTCTTCTGAAGTGCATTAATGCTGTTGGTGACCTTTTTCTTACTTAATAACAGTATTTGCTTTGTCTTTTGTTTTATTTTTGTAG
Seq C2 exon
ACAATAAAGCCTGCAGATATTGCCACAGTCCGAACACTTGGTCGACCTCCTCACCTTATTATGCGTATCATGGACTGTGTGTTACTGCTTTTCCAACGAAAATTGAACAGTGTAAAAATTGATCAAGAAAAGAGCTGTACCACCCCATCATGGCAAGAATCTTTGAAACTGATGACAGCAGGGAACTTTTTACAGAACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(16.6=100)
A:
NA
C2:
PF127772=MT=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCTGCTGAGAAGGTG
R:
AAAAGTTCCCTGCTGTCATCAGT
Band lengths:
342-1194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]