MmuINT0050944 @ mm9
Intron Retention
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28320463-28327009:+
Coord C1 exon
chr15:28320463-28320639
Coord A exon
chr15:28320640-28326805
Coord C2 exon
chr15:28326806-28327009
Length
6166 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TGCCATGCTCCATCCCACAGACC
3' ss Score
10.23
Exon sequences
Seq C1 exon
GTTTTAAAGGAAGTCACAATGAAGGCACAGGCTGCAGAGAAGGTCAAAGCTGAGGTGCAGAAGGTAAAGGACAAAGCACAGGCCATTGTCGACAGCATCTCCAAGGACAAAGCCATCGCAGAAGAGAAATTAGAGGCAGCAAAGCCAGCCCTAGAAGAGGCGGAAGCCGCACTCCAG
Seq A exon
GTGAATACACGGGAGGTGGCAGGTGCTCACAGGGAAGTCATGTGGACCAGACCAGAGCTCTAGCCTCTGGTTTAGCCGTGTCTGCAGAAACTATCAGCCCTATAGATCTCACACAGACAGATGAACATTTTGTGCTCATTTTTTTTAAAGGAATAATGAGCCCTGTCACAGAATAGCAGCCAAGAGTCTTGGGTTGTTACTTCAACCTTTTCGTTAATAGTCTGTGTGTCAGCGGGAAAGTTGAATGAAGTTTCCAAGATGTTTCTGGACTCACTGAGGACTTTGAAGTGGGCCATCTATGAGACGAAGCTTCCTCTGAGTCTGTTTGTGAATCATCTAAAATGAAGACTGTTGATTTAGTGCAGCCCCTTAATGACAGAGGTGGAGTGACTTCCTACACGGTCAGGGCAACCATGTGACCATAACAGCACTGATAACCTCACAAAGTATTTTTTTTTGAGAAATGTAATATGTTCTGTGAGATAGACCATGACTTATACGGTAGGTCAGTGTTGAGGGATTGATGCAGGATTCTCTTTTAAAGATTACCTTTAATTCATTCTTATTCATCTATTCCCTTAGGCTATTGATCCTTGCCTTAGAAATGGATGAAAATAAAAACAATTACGCTGTGTGTCCAGTGCTAACACAGGTTATTTGACCTCATTTGGGCACGGATCAAAGCTTGATAATGAGATTATGTTCTCTTACCACTTCCTTAGCATGATGCCTGAGAAATTTCCAAGACTCCTTGATCCCAGGCTTTAGGTTTTGTTTTGCTTTTTGTTTTAGGCATTTCTGACCTAATAGAATATACCACACAGTGGTAGAGTTCTTGCTTGGCATATGTGAGGCTTTTTGTTTAGTTCCCAGGATCACAACCAGCAATATCAAAACAATAACGAAAGTTACATGTATTTTCTGTGTTTTGAGACTATGAATATATTGCTTTCCCCTTTTCCCTGACTTTCTATACTGTACTTGCATTTGATATGTTCTGCATGTTCTGCCTGAGCTATCCTCCGGTGTTCTTCACGCTCTCCTGGGCCTTTAGCCCCTGAGATCTGTGGACATATACTCCTTCCTCCCCAGAATTTTGTCACGTTGGCTATACTGAGATAAGGGCACTGAGCAACAACTTTTAAAACCCTGTTGAATCCAGGGTACCTATAATCACAGAACTGTCATGTAAGGTTTCTCTGGTATTGCTTTTAAAAAGAAGGCCAACATTTCCCTAAAAGTTAAGTGTTGACATCGTCTGTTCGTATTGTAGGATGTTTCTAGTATTTCTCTAAATTGTAGTTCTCTACAGCTAAAATATTCTGCATTATGTAACCACTGGTGAAGATGTATGTGGAAACAGAGGTAAGGTGATGAAGCGTTTGTAAACTTCATGTTAGTATAACAAAATACTGGAGATAATTCCTGTAGGAAGAGACCAGGCCTGTTTTAACGTACACATTTAGTGCTTGAGTCTGGTATGAGGCAGCATAATGTGGCCAGGGGACATAGCAGAAAACTGCTTGCTTTAGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTAATACCAGAGGATCCCGCAATACCTCTCCTGAGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGGCAGAAGCTGGAAAGAACCCAGATGCCCCTTAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATGTATGGAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACGCATGAAACTCAAGAAGAACAAAGATCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAATGTTTGGAGCTGTGATGAAAGGATGGACCATCTAGAGACTGCCATATCTGGGAATCCATCCCATGATCAGCTTCCAAACGCTTACACCATTGCACACACTAGCAAGATTTTGTTTAAAGGACCCAGATAGAGCTGTCTCTTGTGAGACTATGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTGCCCAAGGAGCTAAAGAGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGGGGAGTGGGTAGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAATATATATATATATATATATATATATATATATATAATATATAATATATATATATTATATATATATATATAAAGAAAAGCCAAAGAAAAGAGGAGAAACTGAACTCCTAGTAGCCCCTTCAAAAGGGCAGGACTCAATAATGGTTTTCATCTATGTTCTACCTCCAGAAAGGCTCCCTCAAATTCTAACAGTATCTCCCTGGGGACCAATCTTGGATTTTTGAAGGACACTATTTCTGAGATCTTGAAAAGTGGTACTGTGAGTCTAATCTAAGAAAATTCTAGATGCAACTAGACACAAACATTGCATCATCAGGTGTGATGGTTTGTATATTCTTGGGCCAGGGAGTGGCACCATTTGCAGGTGTGGCTTTGTTGGAATAGGTGTGACCTGGTTGGAGTAGGTGTGTCACTGTGGGTGTAGGCATAAGATCCTCACCCTACTTGCCTGGAAGTCAGTCTGCCACTAGCAGCCTTTGGATGAAGTCATAGAATTCTCAGCTGAGCTCCACCTGCTCCATGCATGCCTGGTTACTGCCATGATCCTACCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTTTTTATAAGATCTGCCTGGGTCATGGTGTTTGTTCACAGCACCCTAACTAAGACATCAGCTTATGTCAATCTGAGAAGAGTCCATAACAAAGAATATGTCTCACCAGACTGAAGAGATAGCTCAGTGGTTTAGAGAACTGTGGGGAATTGCAGGCTGGTATCCAGTTGAGCTGAGGTCTGAACCCCGATGGTCATAATTCACCTACATGATGCTCCTAGAACACTGGCCCCTGCCCAACTTACCACCTCCCACAGCCCCCACAAGAGAATCATGGTCAGTAGTCACTTAAGCAATGGCCCAGGCTTCTGACCTTCAGGATAAACTCCTCCCCAGTTACCTAGCAACAGTGAAGACCTTAAAAGGGGCTGTTAGGCCCCACCTCACTCTCTCACTCCTTTGTTCCCTTACCTCTCACTTCTCTCTCCTCTTCCCTTTCTCTTTGTTTTTTCCTCTCTTCTTTCTCTCTAGCCTTTCCTCTCCCTCTTCCTCTTCCGCCCTCCTCTCCCTTCTCTTTACCCCCCCCCCAGCATTTCTATAATAAAACTCTTAAACCATAGTCTCTGCTCCATCAAGACCTGCTGTGCACTCTGGTCAGTGCCTGGAAGTGCTACAGGGTGTCAGCTTGGGGTACCTGGTTGGGGGCTGCCCCTTCTCCACACCCCGCCAAGTGGGGTCAGCCTTAGATGTTCACCCGGGACCTTGTGGAAAGCACCAGCAGCTCTGCCTGCGTCTGCCTGCCCAGAGAACAGGAACTCTGGCAGGACGAGGGCCCCCTTTCCTTCCCTTCTTCCCCAGGGTCTCCCCAGGGCCCCCCTTTTTTGTTCCCAACAGAGAACAACATCTTGGATCACCTAGTTCATGTCTCAGAACCCACACATTGGCTCAGAACTATCCATAATTTCAGTTCTGGCAAGTTAACTCCCTCTTCTGATCTCTGTGGGAACTAAGCATGCAAGAAGTAACTGCTATCTTACCATGGTGTATAAGGCCTTATACATACTCATGTTCCTGCAGATGCAGTGAATAGAATCCAATAGCTACCAGAAACACTTTGGGCTCTAGATATAGTATCAACAGCAGCTCACTTACTCATGTGCCCGACATAAGCACACAACTGTCAACTTAGGTAATTGATGCATTTTTGTGTAAGTGTAACTTAATCCTAGTTTCCCACTGGCTGTTGCTCTCTTTCCCTCCTTCTTCAGAAGTCACACATCTCAAATAAGGGTCTGACATTTTCAGTTAGTCGCCTCCAATAACCTCTAGCTGCCTAGCTTTCAGAAACGCTGGTAGGTGGAAACAGCTCTTCACAGCCAATCACTAAATTGAGTGTGAGTGTCTACTCCATATCAGAGAATGTTGACCGGCTGACAGGGGATGCAGATAAGAAAGAAGGCTTTAAGACACGGACGCACAGGGTCATGTGCTGTTTGTCCTGAAAGCAAGCCTGCATTAGACTCATCTTTCTCCAATACTGATTTCATAAAAAGTTCAGCCGAGAAAATGCTACCAACTAAAAGAGGTTGATTATTAAGTAATTTGCTGCATAAGAACATCTGTGCTAGGATTGGAATAGAGCCTTCGTGAGAACCCTGTGAAATTCGAATTGTCCAACTCTCTTCATTTAAAGGTCAGTTCCCAGCTAAGAAACCTCTAATTATTCAATCTGTCAGCCCCAAGGCTACCCTACGGTGTCAGTCCACTATGACAATCTCAGTTGCTTTAGGAGAGGCAGAGGCAGATTCTTGACCTACATAGCTAATGAGCAAAAAGGCCCTGTGAATATAGGATTTTTCCTCATTTCAAACCCTGGTAGCTACTTAAGTGCTGAGTATTTTGTTTTAGACTACTTCTTCTTCTTCTTCTTCTTTTTTTTTTTAAAGAAACATAAAGAAGTCTGTACAGTTTTAGGGATGTCACAGTTCCATATTTGCTCACCAACATTTCTCTCTCCTCTTGCTGCTCCTTAAAATTGTAAAAATATGGCCTTTATGCTCTCCTAACCACACATGAGTACACATATATAAAGGAAGCTAGGATCTGCATTTGAGAGAGAACATGCAGTGTATGTCTTTCTGAGATGGGGTATCTCACTAAATATAAACATTTCCAGTCCCATGTATTATAAAATGAGGTTCTAAGGGAGGAAAGTGGAGAGGGTGTTGGGATAAATGTGATGTGAAAATGGGAGACTACTGGGAGTATAAGTGTTCAAAAATGGGGACAGGAAAAGTAGGAGGAGGGTGCTTGGAATGACAAGGGCCAGCCAAAGCTAAGTATGTGTGAAAACGCCATTAAGGAACCTGTGACAAGGTTTCTGAAGAGAACGGCTTAGCAGTTCAAAGCATGTACCATTCTTGCAGAAGATTCAAGTTCGGTTGCTAGCACACTGTTGGGTGGATCAGAACTGCATATAAGTCCAGCCCTAGAGGGCTCTGATGCTCCAACCTTCATAGACACCTGTACTCACCTGCAAACACCACGCCTGTTACATAATGAAAAATAAAATATCTTAAAAAATAATCATAAGCCAGGCAGTGGTGCATGCCTTTCGTTTCAGCACTTGGGAGTCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGTTCTTCAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCCAAAAAAACAAAACAAAACAAAACAAAACAAAAACAAAAAACAAAAACCAAAAAACCAAAAAACAAAAAACAAAATAAAAAACAAAACAAAAAACCAAACCAAACTAAACCAAACCAAATCAAACCAAACCAAGCCAAGCCAAACCAAGCCAAACCAAACCAAACCAACCCAACCCAACCCAACCCAAAACAAAACATAAAACTTGCAGGTTTGTAAGTTAATTAAAAAAAAAAGGAAAGAGAATTATAAAGAATTTTGACTCTGTCTGCTCTCTGTTGAAACACCAGCGTTCAGACACAAAAGTTTGTCTTCATTTCCTTATCTGAGTGCCATGCTCCATCCCACAG
Seq C2 exon
ACCATCAAGCCCTCTGACATTGCCACAGTGCGCACCCTGGGCAGACCCCCTCACCTGATCATGCGGATCATGGACTGTGTGCTGCTGCTGTTTCAGAGGAGGGTCAATGCGGTGAAAATTGACGTGGACAAAGGCTGCACCATGCCTTCCTGGCAGGAGTCTTTGAAATTGATGACAGCAGGAAACTTTCTCCAGAACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-Dnahc5:NM_133365:58
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=FE(47.5=100),PF127772=MT=FE(16.6=100)
A:
NA
C2:
PF060089=Laminin_I=PD(3.3=5.9),PF127772=MT=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: