DreINT0058109 @ danRer10
Intron Retention
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9295379-9302128:+
Coord C1 exon
chr16:9295379-9295555
Coord A exon
chr16:9295556-9301924
Coord C2 exon
chr16:9301925-9302128
Length
6369 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
TTCTGTTTATCTTTTACCAGACC
3' ss Score
8.34
Exon sequences
Seq C1 exon
GTGCTGAAGGAGGTGACCGTCAAGGCTCAAGCCGCCGAAAAGGTCAAAGTGGAAGTGCAAAAAGTCAAAGATAAAGCGCAGGCTATAGTTGACAGCATTTCTGCGGACAAGGCCATTGCCGAAGAGAAACTGGAGGCAGCCAGACCTGCTTTAGAAGAGGCTGAGGCAGCACTGCAG
Seq A exon
GTCAGGAACAATAAAAACCCATTACACGACTGATATTACTTCATAATAATTTAAATAATGCGCAACATTAGAACATCACAGAAATCATTTGAAAATAAAGCACTGTTTCTATATTGTGTGTGTTCAACAGAAATAAGTCCTCACTTTTTGGGAAACGAGTGCAGTATATCAGTAATTTTATTTAAAGTTTTTACTAGAAGGAAACCTTTTTTTGTGCATTAAAATGCATCGTGAGTCAGAGCAGAAGACACTGCATGCAATAACAATTGCAGTCATGTTGTCTTGAGTTTGAAAAAGGCATCTGATGCTCAGGATTTTTTTGTACAACCTGTGCACACACTGTTAGATATTTTATCGTATTTTAGCGGTAACTTACTGCCAGCACTGTTGTAACTTACCTGCTAATGTGTTTTACAGTAGCAGGGTCATTCATTCATTCATTCATTCATTTTCTTGTCGGCTTAAGCCTGGTTTATACTTCTGCGTCAAGTGACCGGCGTAACCCACGGCGCATGCAACGCGCATAGCTGTGCATTTATACTTCTGCATGCTGTCTCTGTTGGTCTGCAATAGCACTTCCGAAACGCTAGTGGGCAGTAAGGTTTAATAGTTCCTCTGTGTCGAGTTTCTTCGCTGCTGTTTTGCTTTTCCTGAACACTTCCTGGATGTACAAGTGACTTAAACTCGCTTATTTTGAGGCAAGAACCGGCGGACGTGCAACAACTTTAACCATGAGGTAAACACAGAACAAAACTTTCCATCCGGAGCTCCTTCACGAGACTCCACACTTGTAAACAATCGCTCGCGCCATTCGCGCGGCTCTCGGTCCGGCCCAGACTCGTCAGCGCTACCAAGCCGTCCAATCACAGAGCTTGCGCAACGCGTCGTTGCGACGTGTAATTACATTTTTTGAGAGGTGCATGTCAGTGACGCCGACGGCCACGGCGAAGGGCGTAGCATACGCCGGCGTTTGACGCAGAAGTATAAATCAGCCTTTAGTCCCATTATTAATCCAGGGTCGCCACAGCGGAATGAACCGCCAACTTATCCAGCAAGTTTTTACGCAGCGGATGCCTGTGGAGGAAACCAGAGCACCTGGAGGAAACCCATACGAAGGCAGGGAGAACATGCAAACTCCACACAGAAACGCCAACTGAGCCGAGGTTCGAACTAGCGACCTTCTTGCTGTGAGGCGACAGCACTATCTACTGCGCCACTGCCTCGCCCAGTAGCAATGTTACAGTATGACATTTTTTGCAGTACTTTTACTAAAGTGCATACACAAAAGCTGTTTGTAGAACAGCATCTCTCTATCACTATAGAGCGCGCCTGACAGTCATACGCAGTTAGATGAATTGATAGATTTGAAGGTTGCATAGAAAGGGTGATGACACTTTTTAATGGTAAGGCAGGAAAAATTGCAGTTTTTATATTTATTTCAAAGTGCTTTTAAAACAAAATTAAACAAAAGCCTAATTCTTTTGAAAAGCTTCTGTAGAGAATATTGGGGGAAATGGATGGGTTTACAGCTATGAACAACATGATCTCACAAGAAAACGTAAATTTATTTCTGCCTCGATTAATCAGTGTGACCCACGGCGCTTGCCTTGCGCATAGCCGTGCGTTTACAGTTCTGCATGCTGTTTCTTTTGCTCTTCAATAACCCTTCTGTCAATGCTAGCTGGCAGTAGGTTTTTATGTTCCTTTGTGTCGAGTTTCTTCGTGGGTATTTTGTTTTTTCTGAGCACTACAAGTAGCTAAAACTCACTCAATCAGAGATGGGAACCAGCAGATGTGCAACAACTTTAAACAGCAGTTACAAAGGTAAACACAAAACAAAATTTTCCATCTGGAGCTCCTCAGCCTTTAGTCCCTTTATTAATCAGGGGTCGCCACAGCAGAATGAACCGCCAACTTATTCAGCATATGTTTAATGCAGCGGATTCCTTTCCAGCTGAACATGCAAACTCCACACAGAAATGCCAACTGACCCAGCTGAGGCCCAAACCAGCGACTTTCTTGCTGTGAGGTAACAGCGCTACCCACTGCACCAACCCAGAGCTAATTTTAGTCGCTAATTTGTACAAATTCATACGAGTTTAGTCATACACAAATGTACGATTTTTATAAGGGGGTGTGGCACCAAACCCCACCCCTAAACTCAACCATCATTCAGGGATGAACAAATCATATCGAAATGTAAAAATTAGCCACTGAATCAAAAAGGTGATTTGGGGTGAGATAGCGCTGGTATGACCTATAAGCATATCTCACCTTTTCACTTTCCACCTGACCACTGCCACCCTTCATGCATATTGTGTACCATTATTCATAAGATTGTTTTTCCTATTTTGATTTTCCTGTGTACATTGCTAAAATGACTACAATACATTTAGATGTAAATTACTGGCAGCACTGTTGCCAGCAATTTACTACACCTGCCCCTTTACAGTAGCTTACTTGTAAGTGTGTTTTACAGTAGCAAGGCGCTACCGCAGTTTCATTTTACAATAAAATAGTCTTATACCACAACTTCTTTTTATAGTGAAATACCCTTTTCTACATTTTAATTTCACAGTACAGTCTTTGTATATGAGATTTAAGGTTTCAGACTTATGCAAAAAATCTTTCTTTCATCAAACTTATTTAAATACATTTCGAGATGCAAGATGTTATTTAATTGGTAGCACTTTTTGAGTTTTAGTAGACCATCTGCTTAATATCTGTTGAAACTGCTGCTAAACAGACATTTAACTGATTATAAGAAACTTAGCAAGTACATGTCAATTCACACTAATCCTATCCCCAACCCTAACCCCAACCTAGCAGTCTACTAATAATCTAATGAGAATTAGTTGAAAAGTAGATGCAATGTAACTTAAATTCAACAAACGGACCATCAAAATAAAGTAACCAATTATTTTGATTCATTAAATGTCTCAGTTTTGTCTTTACCTAGCCGTACTTGATTACTCTGATTACAGTAGAATATCGCAAATCCCTATTATGCAGTAAATTACTGTGAAGGTTTTCAAATTATTCACAATGCAGTACATATTACAGTAGTAAACTGCAAAGAATACATGTTGTAGTTTATATTCTTAACATGGTAAATGGTGCATTCACACTCACTCTCTTTCTCTCTGGTTAATATGCTTAAGTGCATTAACTTGTGCTACATGCAAAATATAAGTTTTTTTTTTTTTTGTCCTTGTATATGAGATTTAAGGTTTCAGACTTATGCAAAAAATCTGTTCCGAAATGAAAGCATTAAAGTTGGCATAATTTGCAACAATTTGTAATGTCATGCGACTCGCATTTATAGGTGAAAATCTGATCTACCTGCTTACACTGTAGACACGAGGACAAATACCTGATTCCTATCAGCTACATTTCCACATATGAACGAGGCCTGATTCTGATCTGAGTAAATCAGAATCCATGTGATATTTTTTTTTCCATGTCTGATCTGTGACATATGATGGGACAAATTTTTTTTATTTGGTCACTTGAAACATGTAGTATAAATTCAGCCTAAAAGCCACAGTGCATTCATTGCATTTTGTTTTTTGAGATGCAAGCTATTATACAAGGAAAAAGGCTCATGATTTTGTTCTGTTTGACTCATTGGATGGAATCAGTGCTTTATTGACAAATGATTTATGCCATTTTCAGTTTAATTCATTGCTTAAATGACTAAAATACATTTAGATGTAAATTACTGGCAGCACTGTTGCCAGCAATTTACTACACCTGCTCATTTACAGTAGCTTACTTGTAAGTGTGTTTTACAGTAGCAGGGCGCTACCGCAGTTTCATTTTACAGTAGTCTTAACCCACAACTTATTTTTATGGTAAATACCCTTTACTACATTTTAATTTCACAGTATGACAATTTTTACAGTACTTTTAATGTACTTTATTTACATTTCACACGGCCACTACAAAACCTTTATTTTAGTATTTACTATTGAATTAAAAAAACAAACAAACAAGTGACGAGATCATGTACAACAGTATTTATTATTATTTATTGTTAATATATTTATTTTAAATGGTTTACAATAGTCACTTTCTTTCATCAAACTTATTTAAATACATTTCGAGATGCAAGATGTTATTTAATTGGTAGCACTTTTTGAGTTTTAGTAGACCATCTGCTTAATATCTGTTGAAACTGCTGCTAAACAGACATTTAACTGATTATAAGAAACTTAGCAAGTACATGTCAATTTACACTAATCCTATCCCCAACCCTAACCCCAACCTAGCAGTCTACTAATAATCTAATGAGAATTAAGTTGAAAAGTAGATGCAATGTAACTTAAATTCAACAAACGGACCATCAAAATAAAGTAACCAATTATTTTGATTCATTAAATGTCTCAGTTTTGTCTTTACCTAGCCGTACTTGATTACTCTGATTACAGTAGAATATCGCAAATCCCTATTATGCAGTAAATTACTGTGAAGGTTTTCAAATTACTCACAATGCAGTACATATTACAGTAGTAAACTGCAAAGAATACATGTTGTAGTTTATATTGTAAAAATGGTAAATGGTGCATTCACACTCACTCTCTTTCTCTCTGGTTAATATGCTTAAGTGCATTAACTTGTGCTACATGCAAAATATAAGTTTTTTTTTTTTTGTCCTTGTATATGAGATTTAAGGTGTCAGACTTATGCAAAAAATCTGTTCCGAAATGAAAGCATTAAAGTTGGCATATGCGACTCGCATTTATAGGTGAAAATCTGATCTACCTGCTTACACTGTAGACACAAGGGCACATATCTGATTCCTATCAGTTACATTTCCACATTTGAACAAGACCTGATTCTGATCTGAGTAAATCAGAATCCATGTGAAATTTTTTTTTTTTCCATGTCTGATCTGTGACATATGATGGGACAAAAATTTTATTGGGACACTTGAAACATGTAGTATAAATTCAGCCTAAAAGCCACAGTGCATTCATTGCATTTTGTTTTTTGAGATGCAAGCTATTTATTATACAAGGGAAAAGGCTATTGATTTTGTTCTGTTTGACTCATTGGATGGAATCAGTGCTTTATTGACAAATGATTTTTGCCATTTTCAGTTTAATTCACATCTTTGGATGAAAACGTAGCTAGACAATATCAACCCAATGTGCACTACCCTAAAATGCACATTAAAATCGGTGGATGGAAACTTAGCAAATAAGAGAAGTGTGATGTTCATGGGGCATTACGGTGCCTGCAGTTTCGGTGTAATTGCACGCTGCCTGTGAGGATGTAAAAATAGATAGTGTGATGGCAGGGTTGCTGTAGGTGCTCTCACAGCGAGCAGCCATCTGAAAGCAGCCGCCTCTAACCAACCCCACATCCCCACTTCAACATACAAACCCAAACCATATCTGTCAACATTGGGTTGTAACCCCAACAAGTTGCAAAATCTATTTTTAAGTTTAACCCATTCAAATTGATCACCTGATGTGGAAAATTAAATCAAGTTATCAAATATAACTCACTTTTCCTTCACTGTACAATTTACATATACATTTCGATTAAAGTTACTGTAGTTATTTAGTGGGGCGGCACGGTGGCGCAGTGGGAAGCACTGTCTTCCTCACAGCAGGGAGGTCTCTGATTCAGACCCTGGCAGGGTCAGTTGGGATTTTTGTGTGGAATTTGCATGTTCTCCTCGTGTTGGCGTGGGTTTTCTTTAGGTGCTCTGGTTTCCCCCACAGTCCAAAGATATGCGCTATAGCTGAATTGAACTAACTAATTTGTCCGTAGTTTATGTGTGTGAATGAGTGTGTACTGGGTTGTAGCTGAAAGGGCATCCTCTGTGTAAAATATATGCTGGATCAGTTGGTGGTCCATTCCGCTGTGGTGACCCCTGATGAATAGAGGGACTAAGCTGAAGGAGAATGAATGAATGAATGAATGAATGAATGAATGAATGAACGAACGAACGAACGAATGAACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAACAAACGAACAAACAAACAAACAAACAAACGAACGAACCCTCCAACAATCCCAAACATCAATGGAAAGCTTATGAATCAGTATGTATAAATCCTATGACTCTTTTGGTCCAGGATCACACTTTTTACACATATTTAATTACAAAATGACATTATCAAAAACACTGTGTGGTTTCCCAAAAGCCAGTTTCAAATGCATTTAAATCCTCCTATTTTACACTTCAGTTTTGATAGATATTCACTCACAGCTCTCTATACTTTTTGTTCAGTTGCTTTATTGGTTACACTTTTTTTCTTTACATACCCTGTTTTGGTTTTTATTAAACTTGTGTATTTCTGTTTCTGTTTATCTTTTACCAG
Seq C2 exon
ACCATAAAGCCATCAGACATTGCCACGGTGCGAACTCTGGGTAGACCACCACACCTCATCATGCGCATCATGGACTGCGTGTTGTTGCTCTTCCAGAGGAGAGTGAACACAGTGAAAACTGATCCAGAGAAAAACTGCACCATGCCTTCCTGGCAAGAGTCACTCAAACTCATGACTGCTGGCAACTTCCTGGGCAGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373:ENSDART00000149818:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=FE(47.5=100),PF127772=MT=FE(16.6=100)
A:
NA
C2:
PF060089=Laminin_I=PD(3.3=5.9),PF127772=MT=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]