BtaINT0050605 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59489974-59491996:+
Coord C1 exon
chr20:59489974-59490290
Coord A exon
chr20:59490291-59491840
Coord C2 exon
chr20:59491841-59491996
Length
1550 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
AGAATGTGATCTTGTTCCAGATC
3' ss Score
6.46
Exon sequences
Seq C1 exon
GGGATGTGTTGTTGGCTACAGCTTTTCTATCTTATTCTGGTCCCTTTAATCAAGAATTTCGCAATCTGCTGTTAAATGACTGGCAGAAGGAAATGAAAGCCCGGGAAATTCCATTTGGAGACAATCTAAACCTCAATGAGATGTTGATTGATGCTCCTACCATTAGTGAGTGGAACCTCCAAGGCCTGCCCAATGATGACCTGTCTGTTCAGAATGGAATTATTGTCACAAAAGCATCTCGCTATCCTTTGCTAATTGACCCACAGACTCAAGGCAAGATCTGGATTAAAAATAAAGAAAACCAGAATGAACTCCAG
Seq A exon
GTAATCTTTGTTTGAATATAAATGGGCTTCCCTGGTGGCTCATAACCTAAAGAATCTGCCTGCAATGCAGGAGACCTAGATCGAACCCTGGGTTGGAAAGATCCCCTGCAGGAGGGCAGGGCAACCCACTCCAGTATTCTTGCCTAGAGAGTCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATTGAGTCACAAGAGTCGGGCATAACTGAGCTACTAAGCACACGCATGAAACGTGCTACTAAGCAATTTCATTGCCCCAGGTCAACAGTATCTGAGAATTATTTCATATTTAGTATAAACAGTATCTGAGAATTATTTCATATTTCATATTTGTTATTAACATTTAGATATTAATATTTATAAAAGAGTGTCTAAAAATTGCATTATTTGGATTCTTGTTTATCTCTCCTAATGCTGTCCATTAAAGGGTTCAGACTCCCTTCTGTTAGGGCCTAAGGCTCTCCTTGATAAACAGAGCAGGGCAGAGCTATGTCACACTAGGTGTGCGGCAAATAAAGACACTCTATAGTTATTCCATGATTATTTGTCACAAATGTGGTGGTAGTGGGGAAAGGCAGTATTGTCACACAGAGCTTTTACCTGCTTCCTAGTAAAAGGAAATGATGCCGTCAAATGCTCTGGAGATTCTTTAGAAAACTGAAAATAGAGCTACCATATGATCCTACAATCCCACTCTTGGGCATATATCTGGGGAAAACCATAATTCAAAAAGATACATACATTCCAGTGTTCATAGCACTACTTACAATAGCCCAGGCATGGAAGCAACCTAAATGTCCATGGAGAAATGGATAGAGAAGGTATGGTATATTTGTACAATGGAATATTACTCAGCCATACAGAAGAATGAAGTAGTATCTTTCACAGCAACAGGGATGGACCTAGAGATTATCATACAAAGTGAAGTAAGCTAGACAAAGACAAATATTATATGTCACTTATATGTATTAGTAGAATCTTAAAAAATGATATAAACAAACTTATATACAAAATATAAATAGAGCCACAGACATAGAAAACAAACTTACGGTTACCAAAGGGGAAAGGTGATGGAGGAGGGATAAATTAGAAGTTTAGGATTAACATAAATGCACTACTATATATAAAATAGATAACCAACAAGGACTTCCTGTGTAGCACAGGGAACTTTTTCTATATTTTGTAATAGTCTGAAAAAAATATTTACAACTGAATCACTTTGCTGTACACCTGAAACTAACACAATATTGTAAATCAACCCTTAGTGCCTTTTAATGCTGTTTGCTCATTTGTGTCCGACTCTTTACGACCTCATGGACTATAGCCCACCAGGCTCTTCTGTCCGTGGAATTTTCCAGGCAAGAATCCTGGAGTGGCTTGCCATTTCCTCCTCTAGGGGATCGTCTCAACCCAGGGATTGAAGCTGTGTCTCCTGTGTCTCCTGCACTGCAGGCAGATTCTTTACCCACGGAACCCCTTCAATTAAATGAATAAAGATAAGGAAATGATGATTTGCTAAGCTAAAGAATGTGATCTTGTTCCAG
Seq C2 exon
ATCACATCTCTAAATCACAAGTACTTCAGAAACCACCTGGAGGACAGTCTTTCTCTCGGAAGACCCTTGCTTATCGAAGATGTTGGGGAGGAACTAGATCCAGCCCTGGATAATGTTTTGGAGAGAAACTTCATTAAGACTGGATCTACCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(8.6=28.3),PF127812=AAA_9=PU(25.1=54.7)
A:
NA
C2:
PF127812=AAA_9=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGGAAATGAAAGCCCG
R:
AGGGCTGGATCTAGTTCCTCC
Band lengths:
342-1892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]