GgaINT0093203 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78588000-78589738:+
Coord C1 exon
chr2:78588000-78588316
Coord A exon
chr2:78588317-78589582
Coord C2 exon
chr2:78589583-78589738
Length
1266 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CTCCACAATTGTATTTTTAGATC
3' ss Score
6.92
Exon sequences
Seq C1 exon
GTGATGTGCTGTTGGCTACAGCATTTCTATCCTACTCTGGTCCCTTTAATGAAGAGTTCCGCAATCTACTATTAAATGACTGGCAAAAGGAAATGAAGGCCCGGAAAATTCCCTTTGGTAACAACCTGAACGTCATAGAAATGTTGACTGATGCTCCTACAATTAGTGAATGGAGCCTTCAAGGATTACCAAATGATGACTTATCCATACAGAATGGAATCATTGTCACTAAAGCATCTCGTTATCCTTTATTAATTGATCCACAGGCACAGGGTAAAATTTGGCTTAAGAACAAGGAAGGCAAAAATGAGCTTCAG
Seq A exon
GTAATAGGAATGCTTGTGATTTCATAGCCTCTAGAAACTCTCAGCTGACAAAACGTGGCAAATCCGTTATTCAAATAATAATTAAAAAACAGTTTTTATGTGAGAAAGAACATCTTGGGACATATTTAGATAGATAAATGACTTGGCTAAACATGAAAACATAGATCTGAAACTTATTAATACAAGCGGCTCAATTGGTATAATGAATTCATTTTTATTATGAACTATTGGAAAATAAGCTGGATAGATAATGTCTGATAAGGGCCCAAGCACAATTCCAGAATACTAGAAACATGAGAAAAAAAAAAAAAAAAAAGAAAAAAGATTAGTACAAGTTCAAATAAATGTTTTAAAATGAGAATGCAATGCACTGTATTGTTACCTTTTTGTAATCAGAAACTGTTGATAATTTGTATTGTCTTAACCTGGATGTATAACCCATGCAAAATATTCTGCAAATGTAGTGAATACAGTGTTACCCCAACATATAGTTTGAGGCAAGATGCACCAAATCAAACAGGAAAGTACAAGGAGGAAAATCTTTGTTTGCTGCAATTATAATTCCACCAACAATCAATTTTTATAAAAAGCTATCCCTAAAAAAGACAGAGGAGTTTGATGGATGATAATGAATTAGATCTTAGAGTATTCATAGGATATTCCTGTCATTACTATTGATTCTTCTGTCACTGTGAAGCTCTTGAAATGGTTGCCTAGCTAGTCATGTTAAAAAGGAAAAAATTGATGATTAGACTAACTTTGTAGTTGTAAACAAACTAAGCTATATGTGCTTTGTGTAGAAGTTGAAAATTAATCACAATTTTACTTAAAATTATTTTTTAAAGGAAAGACTACTTAGTGGCTTATTCAACATAAAATATTAGTTTTCAAAGGAAAAGCCCTAATCTTGGAATTGGTCTTGCTGCAGTTAGGCTTGAGAAAATTATCTAAGATAAAGCTGTGGCTAATAGAAGGTTCTGTGAATTTCTGTTCTCATTGCATTCATAGGATATCGAAACTTTATGTGCTGAGTTGTTTTACTCTTGCAGTTGAAAATTAGCAGTTTGCATTCAATGACATCTGAAAATATAATACACTGAAACTAATCTTCTCTTGTACTCACAGTCTTTGCCTTGATTAAGCTATAGGACTATTCTTGTCAGTAATCTATCTGAATAGAATGAAATAATCTTTAAACGTAAAACAGGCAAAATGTTTCGGTATCTGGACAAAGCTTACCATATAGCTCCACAATTGTATTTTTAG
Seq C2 exon
ATCACTTCTTTGAACCACAAGTATTTTAGAAATCACTTAGAAGACAGCCTTTCTCTCGGAAGACCTCTTTTGATAGAAGATGTTGGTGAAGAGCTGGACCCAGCATTAGATAATATTTTGGAAAGAAATTTTATTAAATCCGGTTCCACCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:65
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(8.6=28.3),PF127812=AAA_9=PU(25.1=54.7)
A:
NA
C2:
PF127812=AAA_9=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCAAAAGGAAATGAAGGC
R:
CTGGGTCCAGCTCTTCACCAA
Band lengths:
342-1608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]