DreINT0058126 @ danRer10
Intron Retention
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9316790-9320683:+
Coord C1 exon
chr16:9316790-9317106
Coord A exon
chr16:9317107-9320527
Coord C2 exon
chr16:9320528-9320683
Length
3421 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AGGTCTTGCTGTTTCCACAGATC
3' ss Score
8.92
Exon sequences
Seq C1 exon
GTGATGTTCTGCTGGCTACTGCCTTCTTGTCCTATTCGGGACCTTTTAACCAAGAGTTCCGCAACCTCCTCCTCACTGATTGGCAGAGAGAAATGAAGTTCCGCCAGATTCCTTTTAGAACCAATCTAAATCTTACTGAGATGTTGATCGATGCTCCAACAGTAAGTGAATGGAACCTGCAGGGACTGCCTAACGATGATCTGTCCATCCAGAATGGGATAATTGTCACAAAAGCTGCCAGATTTCCCCTGCTGATTGACCCCCAGACCCAGGGAAAGATCTGGATCAAGAACAAAGAGTCCAAGAATGAACTTCAG
Seq A exon
GTAAGAATCACAATAGCTATTTTTGCAGCCACCAAATTTTATGCATATTTTGGATATGTGCATAAAAAATGGTAGATGGAAACACCAAGATGCGCATACATTTTTAAAATGCACATAAAAATACATGCGCATAACTAAGCAGAATAAACTCTTTATTCGATAAGAAAAGATGTGCATAAACTACAATGGAAACACTTTTAACGAACAAACTCCAGTATGCGCATTAAAAAGGTCATGTGATTTTGTTATAAGAGATCATGTGATGATAAAAATGTGTATGAATGGACAAACCAGCAGGCTGAGCACATTGTAAAATATCTGAAATATTGTTTAGGTCATTTCTAAAACACCTTAACCATTTCAGTATTGGTGTTAATATATTACTAATGACCTCCAGAACTGTCAAGAGTGCCTGTGCTCCACATCTCATGCCTTCAAATTCCACCTCGCGTTTACTTTAATAAATGAAGAAAAGATTGGATGGAAACGCTGCTTTATTTGCACGTCTTTTATGCGATAACACAGTTTTGTACATAAAGTTAATTCACATTTTTGGATGGAAATATAGCTATTGAATAACTCGTACAGTACATTGTTGATAATATGAATTTACACAGTGTGGTTCATCGGTGTTTATAGAGTACATATTGCTTTGTTGAAAAAGATGTTTGCAACCCGGGCTCATTGTGGAAACGTAGTCCCGCGGACGTTTCTGGAGATCGCGGAATACGTCCCGGCGGGTACGTACGGCTGCAGTTTTTGTTTTCGCGAATCCGCGAGAGGCCGCTGTTGCTCGCTTTTTCGCACCTAAAGCAGGTCGCACACCAGAAGCGCCGCTCGGCGCCGCAACACGGCGCGTACATGACAGTTTAAGGTATCACACACCAGACGCGCACATTCGAATGATATTTAACATGAAACTAATCAGATGGCGCTCTGTGGCGCGGCTGAAAAATGAACTGCGTCCTGAGCCGTCGCCGGGCGCCGCCGACAGGCGCCGACTTGCGGCGCCAGTGTGTGTACCCTGATAGAAACCTATGTTTAGAATTCTAAAATACATAGCGCTGCGTGGCGCTGCGCGGCGCGCCGCCGAGCGGCGCTTCTGGTGTGCGACCTGCTTCAGACGCCTCTCCGCGCCCGCGCTGTTCTCGCGTGAACCCGCCGGACGCCGCTATCCGACTGACTGGATGATTGACTGCGCGACTGGCCAATCGGCCGACTCGCCCTCCTCCTTCCCTGAACCCAACCGATTTTACCGATCGACCCGCCCGCCCGCTCGCTTCCCTAAACCCGAGCAACAGTTCACAAAAGCCGTCCAAAAAAATAAAAGCCCTGATTTTTATTATTCCACCGCGTTTTCGGATTTCGGCGCGTTCTCACCCTGTCACGAAACTCGTTCACTTAATTTTTGGGATTCTGTTTTTGTCTTACCTGATTGCTGGAGCTGCTCTTTCCCGGACTCGAAACCGGTCGCCGTGGTCGACCCCTCTCCGCATCTCGAGCCTGCCGATGTACGCGCTGAGCTGAGTGGACAAACGGGTTGCAGCAGGGAAGCCCTCCACAAGGAGGTAAGGCATGCGCGAAAGGGAACAGCGTCACACCACCCCACAGCGTTCACTTGAAAAAAATAAACGCGGCCGTACGTACCCCCCAGTACGTATTGCGCTGTCTCCAGAAACGTCCGCGGGACTACGTTTTCAGAATGAGCTTGGGTTGGATGTTTCAATCAGTTAGCTGTTACAAATCATAAATAAAAACATAAATGAAAATACATTTGTTAACATACACTACCTGACAAAAGTCTTGTCGTCGATCGCAGTTGTAAGAGCAACAAATAATAACTTGACTTCTAGTTGATCTTTTGGAAAAGTGGCAGAGGGTAGATTTTTACTCTGTACCTTTAATTAAAAATAATTAAAAATAAAGACATAATCATATTTTATTTTGGTAAAATAAGCGTAATCTAGAGGCTTTTCTCTTTCATATAAGCCACTTCTAATATCAAATAAAACTAGAAGTCGAATTATTATTTGTTGTTCCTAAAACATGGATAGGCGACAAGACTTTTGTCAGGTAGTGTATAGTACAAATAAAACCTAAATAAACCATTTGTGAATAATACAACCCAAGCTCATTGTAAATATATGCCTCAGCCTTTATTTTCCAAAATGTAAAATACTTTTTCTGGGCACATTTTATTGCACGTTTCAAATCCACTACTATCCACTATAGAGGGCGTTGTCTACATTTTTGTTAATTTGAAAAACTTTACTTAGGAGTATGTTTTGTTGTATGTTTTAGATGCATATCATTCTTGTATCACCATAAGTGGAGTTTTATAAACTAACTTCGAGAGGAGCATGTGATATGATTGATCACTGCTAGCTTCTCATTCGTAATCAGTAATAATCCAATCAGATTAATTCAAGCTTACAATAAATAGACCGATATCACCCTACTGCCTTACCTCCGTTTTGGAAGAATCCCCCCTTCCAACCTTTCTCCTCCTTTTCCTCCCTTTTACTGGCGGAATTCTGATTCCGGACCCCCTTTATATGCTTATTGACCAGGCAGGAGCCTTGGGCTCAATTATCTCTGAGCTCAGAGATTTTCTCCTAGAAAAGCATGCCAAACATGCTATTAACGCCAAGCGTATTTAAGTGTGAACTTTTGGAATAGGCAAAGAGTATCATACAGATTACCTAGCAAAACAGAGACCTAAACCTAACCAATACTGTTTTCAGTAGCAAAGATAAAAGGGCATTTTTTTGTATTTTTGTGGTATTTATTCGTTGTTGTGCAAAGAACTGCATGAAAACAATCCTTTTTTCATCCATAATATGTCATTGTAAATATAAATTGTGTGAAAAGAAACAAAAGTTGTTGGTGAAACAGTCATACCACCTGAAGTCAAATGTGTTTAAGTATGTTTTTGCAAACTCAGAATGTAAGCAGAATTTCCAACTAGCCTGTGTTGGAATAATAGAAGTATATGAGCAATTTTGGAATGCTGGTCTTACAAGAAAATACTCAAGAACAAAATGTGCTTTACATCTTAAAATCACAAGTAAAACATACTTTTTTACATATGAAAGGAGAAAAAAAGTGAACAGACATTCACTTTGTCGTGCTAAACTGACAATGGTAAGAGAAAATATGCTTTAGGTGGTAAGTAAACATAAAGTACCCTAAAACAAAATACCTTTTCAGGTGTAAAAAGTTGAACACTTATATTCTTGCAAGCCATGCTGAAATCTAATTGGCCATGCACAGCTTGCACTGATGCATGGTTTCTTTTTGAGAGGTCAGACACCCTTTCCAAGGTTTGACCTCATAACAATTCACCTCCTCCTTAGGTAATAGCTTTCCCCAGGAACAGAACTTGAGTTGGGTCTGTAATAAGGTCTTGCTGTTTCCACAG
Seq C2 exon
ATCACCTCGCTGAATCACAAGTATTTCAGAAACCATCTAGAGGACAGTTTATCTCTGGGGCGTCCGCTACTGATTGAGGATGTTGGGGAGGAATTGGATCCAGCCTTGGACAATGTCTTGGAGAAGAACTTCATCAAGACTGGCTTCACTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373:ENSDART00000149818:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(8.6=28.3),PF127812=AAA_9=PU(25.1=54.7)
A:
NA
C2:
PF127812=AAA_9=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]