BtaINT0050609 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59508989-59509794:+
Coord C1 exon
chr20:59508989-59509103
Coord A exon
chr20:59509104-59509603
Coord C2 exon
chr20:59509604-59509794
Length
500 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TTAAATGCTGTCTCCTCCAGGTC
3' ss Score
11.61
Exon sequences
Seq C1 exon
TTGCCACCCGGGGTAGCATCCTCTACTTTCTCATCACGGAGATGCGCTTGGTTAATGAGATGTATCAGACTTCGCTCCGCCAGTTTCTTGGCTTGTTTGACCTTTCCTTGGCCAG
Seq A exon
GTACGTCTGTACTCAGGAAGCCAAGCTGAATTCGGTATCTGTGGGATAGAATGATGATATTATGTTGATAACTGCCCCCCCCCCCCCGCCTTTGCTACTAAGCATCTTCTTTTTTTTTAATCTAAATTGAGCGTAATTACCAGTATGTTAACAAATTATTCTCATTTGTTATTTTATGCTCAGAGAAAGTTCTACCAACTATTCATCCATTGATTGATTCCTTTGGGTTCACGAGTTTCTACTTAACAAGAAAATTCCCCAGATGTTGTTGTGAGTGATAATGTTTGGCGGGTAAAATTTTATTCAGACGATGTGAAGGATTCTCTTATGTTATTTCATGTTGAGAGAATGCTTGTTATTTCAGATTTAGGAGGCTTACTAATGATGCATATAAAATAAGAATTGGTCCTCCAGAGCTACTTGTTTTCCATGAAAGACGTTTTTAAGAACAATTGAAAAGGGCAGTGGGCTAAACCTGATTTAAATGCTGTCTCCTCCAG
Seq C2 exon
GTCTGTCAAGAGCCCAATTACAAGCAAGAGGATCGCTAATATCATTGAGCACATGACCTATGAGGTTTTTAAGTACACAGCCCGGGGGTTGTATGAGGAGCACAAATTCCTGTTCACGCTGCTGCTTACCCTGAAGATTGACATCCAGAGGAACCGAGTCAAGCATGAAGAGTTTCTCACCCTTATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGGGGTAGCATCCTCTA
R:
AGGGTGAGAAACTCTTCATGCT
Band lengths:
294-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]