MmuINT1008850 @ mm10
Intron Retention
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28420965-28421755:+
Coord C1 exon
chr15:28420965-28421079
Coord A exon
chr15:28421080-28421564
Coord C2 exon
chr15:28421565-28421755
Length
485 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TTAAATGGTCTCTTCCTCAGGTC
3' ss Score
9.89
Exon sequences
Seq C1 exon
TTGCTACACGGGGCAGCATCCTCTACTTCCTGATCACGGAGATGCGCTTGGTTAATGAGATGTATCAGACTTCGCTCCGTCAGTTTCTGGGCTTGTTTGACCTTTCCTTAGCCAG
Seq A exon
GTACACCTGTCCCTGGGAAGTTGAGCTGGATTCTTTATCTGTGAATGAGGACGATATTAGAATTTCCCTTTTGCTTATCAGTATGAGCATTTTCCTTTCTTAAGTCTGAGATTAGTGTAGTTATCAGCATGTTAACAAATCATTCAGACGTGTCATCATATGCCCAGAGGAGTCTATGCTGGCCATTCATCCATTGATTTGATTCCTTTGGCTTCATGTGTTCCACTAAATGGGAAAATTTCCAAGACATTGTTGTGAATAATAATGGCCTGTAGGTAAAATTGATTTAGACAGCAGTGAGGAATTTTGTTATGTTGCTTCATGTTGAGAGAATTCTTGTTAGTTTAGATTTAGGAGCGCTCTCTTCATGTGTTAAAGTAAAAATTAGTTCTCCAGAGTTACTTATTCTCCACCAGAGATGCTGTTTTTATAGACAAGTGAAAAGGGCAGCAGGATAAACGTGTCTTAAATGGTCTCTTCCTCAG
Seq C2 exon
GTCTGTCAAGAGCCCAATTACAAGCAAGAGGATTGCTAATATCATTGAGCACATGACCTATGAGGTATTCAAGTATGCTGCCCGAGGCCTATATGAAGAGCATAAATTCCTGTTCACTTTGTTGCTCACCCTAAAGATTGACATCCAGAGGAACCTAGTCAAACATGAGGAGTTTCTCACTCTCATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262:ENSMUST00000067048:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACACGGGGCAGCATC
R:
AGTGAGAAACTCCTCATGTTTGACT
Band lengths:
294-779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types